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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00066077-protein ID=TCONS_00066077-protein|Name=Ahr-a|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MDLPTNNIDLNNRRKKKFTGGNASKRHRDRVNVEFNNLAQLLPFPESVIA
KLDKSSILRLAVSYIRAKSFFKGASILRRETLSSLIKEGTGAVTEIFSKA
LEGFLLVLTEDMKVLFVSESVRDYLGYCQAGIIHENFLQFVNPLDHCVAQ
QNVNYQQTEASTCSDQTDAINENESHGSPPPPVARRFVCRMKCAFSCSSR
FYTAYRSFQFSGHLRKSSIQEGRQEKTVNTLVVFANPLNNSENNTTASVP
RKKEKEARSSSSFRKEMNTYDTYTSGFRIEPTLRPHVTPILVTSQEHSDI
CASNEMTAVDGSSPAEAVKVEEIPSKPPPDLPPLIKSERYSPLFLSKNIY
RDSAATEQFYSDQSDDSKFSPVSSPDLLWKQKLYNDERYLPFSKSSDRDA
YWLKVERRLHEEQSFMHPSVLEVARRESRLELPRRETRSTSPRINHHYAP
LEVYPSQRKRHFIDTSDNFVYKRKKLEVGAFQRSNKFDINSLLGLDDTAS
HNTSYKNKPY Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0005634 | nucleus |
| GO:0005667 | transcription factor complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005737 |
cytoplasm |
| cellular_component |
GO:0005634 |
nucleus |
| cellular_component |
GO:0005667 |
transcription factor complex |
| molecular_function |
GO:0046983 |
protein dimerization activity |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001067 | Nuclear translocator | PRINTS | PR00785 | NCTRNSLOCATR | coord: 181..194
score: 43.65
coord: 50..70
score: 41.8
coord: 107..126
score: 39.72 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | SMART | SM00353 | finulus | coord: 22..76
e-value: 1.7E-7
score: 40.9 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | GENE3D | 4.10.280.10 | | coord: 7..67
e-value: 3.4E-9
score: 35.9 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | PFAM | PF00010 | HLH | coord: 25..66
e-value: 1.2E-7
score: 31.5 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | PROSITE | PS50888 | BHLH | coord: 15..68
score: 13.427 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | CDD | cd00083 | HLH | coord: 25..66
e-value: 2.39274E-7
score: 46.8235 |
| IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | SUPERFAMILY | 47459 | HLH, helix-loop-helix DNA-binding domain | coord: 13..67 |
| IPR000014 | PAS domain | SMART | SM00091 | pas_2 | coord: 92..158
e-value: 0.0013
score: 28.0 |
| IPR000014 | PAS domain | PROSITE | PS50112 | PAS | coord: 93..146
score: 8.719 |
| IPR000014 | PAS domain | CDD | cd00130 | PAS | coord: 103..146
e-value: 9.3739E-5
score: 39.5387 |
| IPR000014 | PAS domain | SUPERFAMILY | 55785 | PYP-like sensor domain (PAS domain) | coord: 101..152 |
| None | No IPR available | GENE3D | 3.30.450.20 | | coord: 87..237
e-value: 1.8E-18
score: 66.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 239..264 |
Blast
BLAST of Ahr-a vs. Swiss-Prot (Human)
Match: AHR (Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 1.840e-30 Identity = 81/223 (36.32%), Postives = 117/223 (52.47%), Query Frame = 0
Query: 22 NASKRHRDRVNVEFNNLAQLLPFPESVIAKLDKSSILRLAVSYIRAKSFF------------KGASILR----RETLSSLIKEGTGAVTEIFSKALEGFLLVLTEDMKVLFVSESVRDYLGYCQAGIIHENFLQFVNPLDHCVAQQNVNYQQTEASTCSDQTDAINENES----------HGSPP---PPVARRFVCRMKCAFSCSSRFYTAYRSFQFSGHLR 215
N SKRHRDR+N E + LA LLPFP+ VI KLDK S+LRL+VSY+RAKSFF G R RE L+ ++EG E +AL GF+LV+T D V + S +++DYLG+ Q+ +IH++ + ++ D Q+ +++ S C++ I E PP P + R F+CR++C SS F + F G L+
Sbjct: 34 NPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAKSFFDVALKSSPTERNGGQDNCRAANFREGLN--LQEG-----EFLLQALNGFVLVVTTDALVFYASSTIQDYLGFQQSDVIHQSVYELIHTEDRAEFQRQLHW-ALNPSQCTESGQGIEEATGLPQTVVCYNPDQIPPENSPLMERCFICRLRCLLDNSSGFL----AMNFQGKLK 244
The following BLAST results are available for this feature:
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