TCONS_00066106-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066106-protein
Unique NameTCONS_00066106-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066106-protein ID=TCONS_00066106-protein|Name=TCONS_00066106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MEDVTTSSAYAPLTSSGANKMFFSDILNGDFSVQNIFSIAFDSSSDFDAL
HSPCSTVTSTTSESDLDIIPSPIYRHPPPLITDVGCSSNSICSSNSICKQ
EQYYLPTPSPPMPSQSDYDVVVPMPFIKKQETTESRFSCNICGKYFKRMS
SLSTHRLIHTNIKPYQCTKCDKSFLRKSDLKKHDMMHSGQKPHQCEICGK
LFSQSSNMLTHLRRHSGVKPFACKICGRAFYRKVDVRRHTLRHKEQGLVH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041383XLOC_041383Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066106TCONS_00066106Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 165..187
e-value: 0.0057
score: 25.9
coord: 193..215
e-value: 0.0019
score: 27.4
coord: 221..243
e-value: 0.022
score: 23.9
coord: 137..159
e-value: 0.008
score: 25.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 167..187
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 223..243
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 139..159
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 195..215
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 165..192
score: 15.874
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 137..164
score: 14.44
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 193..220
score: 14.752
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 221..248
score: 10.408
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 132..183
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 173..230
NoneNo IPR availableGENE3D2.30.30.380coord: 86..141
e-value: 0.0022
score: 17.6
NoneNo IPR availableGENE3D3.30.160.60coord: 183..206
e-value: 5.2E-18
score: 64.3
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 221..243
e-value: 5.4E-4
score: 20.2
coord: 137..159
e-value: 3.2E-4
score: 20.9
coord: 165..183
e-value: 0.0018
score: 18.5
coord: 193..215
e-value: 9.2E-5
score: 22.6
NoneNo IPR availableGENE3D3.30.160.60coord: 207..248
e-value: 2.2E-18
score: 65.9
NoneNo IPR availableGENE3D3.30.160.60coord: 170..182
e-value: 7.4E-11
score: 41.5
NoneNo IPR availableGENE3D2.40.155.10coord: 142..169
e-value: 9.2E-17
score: 61.4

Blast
[Close]
BLAST of TCONS_00066106-protein vs. Swiss-Prot (Human)
Match: GFI1 (Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.027e-43
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 0 
Query:  128 KKQETTESRFSCNICGKYFKRMSSLSTHRLIHTNIKPYQCTKCDKSFLRKSDLKKHDMMHSGQKPHQCEICGKLFSQSSNMLTHLRRHSGVKPFACKICGRAFYRKVDVRRHTLRHKEQGL 248
            K   + E  F C ICGK FKR S+LSTH LIH++ +PY C  C K F +KSD+KKH  +H+G+KPH+C++CGK FSQSSN++TH R+H+G KPF C +CG+ F RKVD+RRH  R  + GL
Sbjct:  303 KAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH--RETQHGL 421

HSP 2 Score: 94.7449 bits (234), Expect = 1.969e-22
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 0 
Query:  127 IKKQETTESRFSCNICGKYFKRMSSLSTHRLIHTNIKPYQCTKCDKSFLRKSDLKKHDMMHSGQKPHQCEICGKLFSQSSNMLTHLRRHSGVKPFACKICGRAFYRKVDVRRHTLRH 243
            +++  +    F+C +CGK F    SL  H+ +H+  + + C  C KSF R S L  H ++HS  +P+ C+ CGK F Q S+M  H   H+G KP  C++CG+AF +  ++  H+ +H
Sbjct:  274 VRRSHSGTRPFACEMCGKTFGHAVSLEQHKAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 390
The following BLAST results are available for this feature:
BLAST of TCONS_00066106-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI11.027e-4356.20Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 ... [more]
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