TCONS_00066210-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066210-protein
Unique NameTCONS_00066210-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066210-protein ID=TCONS_00066210-protein|Name=TCONS_00066210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=600bp
MVSSAGGFANLKLKKALKQTTLDTLGILGFDQPTPVQATCIPLILSNKDV
VAEAVTGSGKTLAFLIPVIGMLQNREEKLKKHDIGALILSPTRELAIQIN
NVLNPFLEKISFTSNLIVGGKSKEDPVKKFNEEGGHIIVATPGKFAKMVK
DTKTGELFQKGLKALEILILDEADRFFQQANFREDLQNILAFVPKQRRTS
LFSATQTTEIESFIRAGLRNPVQVVVREKRAQNVIKRTPDSLSNFYFVCE
ADLKLQRLVALLRQHRDEKFIIFFNTCACVDYFTKLLAILLKNIPILSIH
GQKVKRAEVFNKFQDIKHGILTCTDVMARGIDIPTVDWVIQYDPPSNVEA
FVHRCGRTARMGNIGKALLLLLPSEVAYIDFVKINQKVQIDEYEGQNIID
DSYSMSHKIRKIAAKDREVYEKGLRAFVSFIQSYIKHQCNIVLQMKELDI
CKLGYGFGLLHLPKMPELKEKDLNGFETMDVDTTLIKYQDKAREKARLER
VEKEMEAAKEKAIEKAKFKASQQTRKSDSWSRQKEKKMKKNERKEKQTLK
RKLKDDGDDDVDDVDDLMKEGRLLKKLKKGKITEKQYQERTNEEELLSDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041433XLOC_041433Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066210TCONS_00066210Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR025313DUF4217
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 532..556
NoneNo IPR availableCOILSCoilCoilcoord: 488..515
NoneNo IPR availableGENE3D3.40.50.300coord: 241..593
e-value: 3.7E-43
score: 147.2
NoneNo IPR availableGENE3D3.40.50.300coord: 8..240
e-value: 4.8E-46
score: 156.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 513..565
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 578..600
NoneNo IPR availableCDDcd00079HELICccoord: 242..370
e-value: 3.68185E-28
score: 108.864
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 281..362
e-value: 5.7E-25
score: 99.0
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 254..362
e-value: 9.3E-24
score: 83.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 254..410
score: 17.764
IPR025313Domain of unknown function DUF4217SMARTSM01178DUF4217_3coord: 404..467
e-value: 2.1E-21
score: 87.1
IPR025313Domain of unknown function DUF4217PFAMPF13959DUF4217coord: 407..465
e-value: 1.2E-16
score: 60.6
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 29..245
e-value: 9.5E-45
score: 164.7
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 41..224
score: 26.435
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 34..211
e-value: 3.3E-41
score: 140.9
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 169..177
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 6..38
score: 7.906
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 85..379

Blast
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BLAST of TCONS_00066210-protein vs. Swiss-Prot (Human)
Match: DDX55 (ATP-dependent RNA helicase DDX55 OS=Homo sapiens GN=DDX55 PE=1 SV=3)

HSP 1 Score: 516.153 bits (1328), Expect = 1.007e-177
Identity = 280/580 (48.28%), Postives = 400/580 (68.97%), Query Frame = 0 
Query:   13 LKKALKQTTLDTLGILGFDQPTPVQATCIPLILSNKDVVAEAVTGSGKTLAFLIPVIGMLQNREEKLKKHDIGALILSPTRELAIQINNVLNPFLEKIS-FTSNLIVGGKSKEDPVKKFNEEGGHIIVATPGKFAKMVKDTKTGELFQKGLKALEILILDEADRFFQQANFREDLQNILAFVPKQRRTSLFSATQTTEIESFIRAGLRNPVQVVVREKR-AQNVIKRTPDSLSNFYFVCEADLKLQRLVALLRQHRDEKFIIFFNTCACVDYFTKLLAILLKNIPILSIHGQ-KVKRAEVFNKFQDIKHGILTCTDVMARGIDIPTVDWVIQYDPPSNVEAFVHRCGRTARMGNIGKALLLLLPSEVAYIDFVKINQKVQIDEYEGQNIIDDSYSMSHKIRKIAAKDREVYEKGLRAFVSFIQSYIKHQCNIVLQMKELDICKLGYGFGLLHLPKMPELKEKDLNGFETMDVDTTLIKYQDKAREKARLERVEKEMEAAKEKAIEKAKFKASQQTRKSDSWSRQKEKKMKKNERKEKQTLKRKLKDDGDDDVD-DVDDLMKEGRLLKKLKKGKITEKQYQ 588
            L   L    L  L  LGF   TPVQ+  IPL + NKDV AEAVTGSGKTLAF+IP++ +L  REEKLKK  +GA+I++PTRELAIQI+ VL+ F +    F+  L +GG++  + V++F ++GG+IIVATPG+   M +    G      +++L++L+LDEADR      F   +  IL F+PKQRRT LFSATQT E+E+ +RAGLRNPV+V V+EK  A +  ++TP  L N+Y VC+AD K  +LV  LR H+ EK ++FF+TCACV+Y+ K L +L+K + I+ IHG+ K KR ++F +F+ ++ GIL CTDVMARGIDIP V+WV+QYDPPSN  AFVHRCGRTAR+G+ G AL+ LLP E +YI+F+ INQK  + E + Q    ++  +  K++ +A  DR V+EKG++AFVS++Q+Y KH+CN++ ++K+LD   L  GF LL +PKMPEL+ K    F  +DV+T  I ++DK REK R + +E++         EK + +  ++  K+ +WS+QK KK KK +  EK+      +++G D  D D+++L+ + RLLKKLKKGKITE++++
Sbjct:   12 LPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMG-FEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKYKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQR---NTADLLPKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKIREKQRQKLLEQQRR-------EKTENEGRRKFIKNKAWSKQKAKKEKKKKMNEKRK-----REEGSDIEDEDMEELLNDTRLLKKLKKGKITEEEFE 575
The following BLAST results are available for this feature:
BLAST of TCONS_00066210-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX551.007e-17748.28ATP-dependent RNA helicase DDX55 OS=Homo sapiens G... [more]
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