TCONS_00066240-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066240-protein
Unique NameTCONS_00066240-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length148

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066240-protein ID=TCONS_00066240-protein|Name=TCONS_00066240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MKLFLKVLGGQELTYTYDDSTTTVNEVKKFLVTKLNKPLSQIKLVYKGKT
LAAEKRLSDYNIQDQAKLHVAVKKTLISSSLKEEQVTPTKPKYKPEELWS
KLSEVLAKNYGPDESAVIMMQFRKDYECMLKTLSLDDIERIAEKNLTT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041453XLOC_041453Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066240TCONS_00066240Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..73
e-value: 3.9E-13
score: 59.6
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 3..74
e-value: 9.3E-14
score: 50.8
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..75
score: 15.645
NoneNo IPR availableGENE3D3.10.20.90coord: 1..79
e-value: 8.2E-17
score: 60.4
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 1..77

Blast
[Close]
BLAST of TCONS_00066240-protein vs. Swiss-Prot (Human)
Match: UBL4A (Ubiquitin-like protein 4A OS=Homo sapiens GN=UBL4A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.412e-23
Identity = 53/146 (36.30%), Postives = 88/146 (60.27%), Query Frame = 0 
Query:    1 MKLFLKVLGGQELTYTYDDSTTTVNEVKKFLVTKLNKPLSQIKLVYKGKTLAAEKRLSDYNIQDQAKLHVAVKKTLISSSLKEEQVTPTKPKYKPEELWSKLSEVLAKNYGPDESAVIMMQFRKDYECMLKTLSLDDIERIAEKNL 146
            M+L +K L G+E +    +    V+ +K+ +  KLN P+ Q +L++KGK LA  KRLSDY+I   +KL++ VK   +   L EE          P ++W  +S+VLA+++   +++ ++ Q ++DYE  L  L+LDDIER+A + L
Sbjct:    1 MQLTVKALQGRECSLQVPEDEL-VSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP--LEKVLLEEGEAQRLADSPPPQVWQLISKVLARHFSAADASRVLEQLQRDYERSLSRLTLDDIERLASRFL 143
The following BLAST results are available for this feature:
BLAST of TCONS_00066240-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBL4A1.412e-2336.30Ubiquitin-like protein 4A OS=Homo sapiens GN=UBL4A... [more]
back to top