TCONS_00066458-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066458-protein
Unique NameTCONS_00066458-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length130

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066458-protein ID=TCONS_00066458-protein|Name=TCONS_00066458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MPSAIQEPSIIDVWNYNIDEEFAKIRDTLEKFPYVAMDTEFPGVVARPIG
DFKSSSDYQYQLLRCNVDLLKIIQIGFTFYNDKGEQPTNGSTWQFNFTFN
LTEDMYAQDSIDXMVFMTQFEFVYIWFELG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041575XLOC_041575Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066458TCONS_00066458Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 13..102
e-value: 6.6E-9
score: 35.3
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 5..123
e-value: 8.0E-32
score: 109.9
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 10..115

Blast
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BLAST of TCONS_00066458-protein vs. Swiss-Prot (Human)
Match: CNOT7 (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.159e-53
Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = 0 
Query:    1 MPSAIQEPS--IIDVWNYNIDEEFAKIRDTLEKFPYVAMDTEFPGVVARPIGDFKSSSDYQYQLLRCNVDLLKIIQIGFTFYNDKGEQPTNGSTWQFNFTFNLTEDMYAQDSIDXMV 115
            MP+A  + S  I +VW  N+DEE  KIR  + K+ YVAMDTEFPGVVARPIG+F+S++DYQYQLLRCNVDLLKIIQ+G TF N++GE P   STWQFNF FNLTEDMYAQDSI+ + 
Sbjct:    1 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLT 117
The following BLAST results are available for this feature:
BLAST of TCONS_00066458-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT71.159e-5367.52CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
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