TCONS_00066517-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066517-protein
Unique NameTCONS_00066517-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066517-protein ID=TCONS_00066517-protein|Name=TCONS_00066517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
MNLLNMADVLENNVFSTRKRSHTESTETNENDRPRSKRQSPTSSTEALPL
LKILIPNYAAGAIIGKGGTNIGDLQSQYGAKIRLSPSREFYPGTEERIVV
LTGEVNQIIDLNNYIIDKVHIDATEGPGAKLRDEERGQKVKIVVPNATAG
LVIGRGGSTIKALQEETGAKIMISGRDEAKVPGERIITISGNTDQRIEAA
QKVVAKVAADAENMANKNLTYSSTQVRNGYGNKHLEMGPVTLGGVSSLQS
VIGSLQSQHSMKTSQNILSSIAQNPISALQQSGLANQLGLSSTMSGLTAG
IPGTTSLAALTGATTMGSLVASIKTQVTIQMEIPDILVGAILGKQGKTVH
EFIQFSGAKIQFSAKNDFAPGTTDRILTIQGDVNQTQIAYFLINQKIVQA
ESELASGIQRH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041616XLOC_041616Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066517TCONS_00066517Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 197..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..45
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 137..204
score: 19.246
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 326..393
score: 15.116
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 48..115
score: 15.305
NoneNo IPR availableCDDcd02396PCBP_like_KHcoord: 140..199
e-value: 2.28088E-15
score: 69.4275
NoneNo IPR availableCDDcd02396PCBP_like_KHcoord: 51..110
e-value: 5.40123E-15
score: 68.2719
IPR004087K Homology domainSMARTSM00322kh_6coord: 136..209
e-value: 2.2E-15
score: 67.1
coord: 47..120
e-value: 5.0E-7
score: 39.3
coord: 325..398
e-value: 1.6E-11
score: 54.3
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 128..267
e-value: 7.1E-19
score: 66.9
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 50..122
e-value: 1.3E-13
score: 50.1
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 140..204
e-value: 7.7E-17
score: 60.8
coord: 328..394
e-value: 1.2E-12
score: 47.4
coord: 52..108
e-value: 1.4E-11
score: 44.0
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 317..404
e-value: 3.0E-15
score: 55.2
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 51..118
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 140..232
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 326..400

Blast
[Close]
BLAST of TCONS_00066517-protein vs. Swiss-Prot (Human)
Match: NOVA1 (RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.942e-49
Identity = 137/464 (29.53%), Postives = 226/464 (48.71%), Query Frame = 0 
Query:   50 LLKILIPNYAAGAIIGKGGTNIGDLQSQYGAKIRLSP---SREFYPGTEERIVVLTGEVNQIIDLNNYIIDKV-----HIDATEGPGAKLRDE-----------------------------ERGQKVKIVVPNATAGLVIGRGGSTIKALQEETGAKIMISGRDEAKVPGERIITISGNTDQRIEAAQKVVAKVAADAENMANKNLTYS--------STQVRNGYGNKHLEMGPVT-----------LGGVSSLQSVIGSLQSQH--SMKTSQNILSSIAQNPISALQQSGLA-------------------------------NQLGLSSTMSGLTAGIPGTTSLAALTGATT--------------MGSLVASIKTQVTIQMEIPDILVGAILGKQGKTVHEFIQFSGAKIQFSAKNDFAPGTTDRILTIQGDVNQTQIAYFLINQKIVQAESELASGIQR 410
             LK+LIP+YAAG+IIGKGG  I  LQ + GA I+LS    S++FYPGT ER+ ++ G V  +  ++ +I +K+     ++  TE P + L+ +                              R  +VKI+VPN+TAGL+IG+GG+T+KA+ E++GA + +S + +     ER++T+SG  +Q  +A + ++ K+  D ++ +  N++Y+        S    + Y N   E+ P             L GV++  +V+         ++ ++ N L+S   N    L   GL                                ++   S + +G TAG     SLAA T AT               +G+  ++  ++  +++ +P+ LVGAILGK GKT+ E+ + +GA+IQ S K +F PGT +R +TI G    TQ A +LI Q+I   +   A+  Q+
Sbjct:   51 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTE-PVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTA-EVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYN----LNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQK 508
The following BLAST results are available for this feature:
BLAST of TCONS_00066517-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOVA16.942e-4929.53RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA... [more]
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