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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00066531-protein ID=TCONS_00066531-protein|Name=TCONS_00066531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=978bp
NDNMNTENVDKMDYKTVKKNLKVNDQELASDALSLSKKPVLKQIDDSETV
ESNDKIDLSKSSHVKNSSLLVKDSGECEHLDVQCDETNPPTNSNEGCTKV
RNDENYYNIDQLSSVKRAPECKTGEFGESRCLDNKATPREHPSATTPTTS
DDIHSFKSNNLQIPEKFLPLYEAWLRKTDSVKRLDPIKRKNRVVISASSD
KRNVKQLSLEQIQKHITSFENSTLVLHNVDAFPVGISKHFPSIDSLLLID
SHIQNCYGGIEKLQHLTTLKLKKCCCSNMSLRSKQLRVLDISENNITNLF
GLSELQFLSYLDASDNRISKINGIEECRNMVYLNLDNNQLISLKGLGHLS
KLSWLSLRHNDVTSLPEISLCRRLVKLDVTENNLIEVPQFEDNALLTSLS
LDSNTIQHLDGMADCWLPLLIIISASNNRLEDVSPLFNLPHLLQLNVKGN
LISNLNNISTRENVPFLQQICLVDNPVLEINKEHLTKCLNIVDNLSMDIE
ETLERLQTGASESFQKLCFEQAMTLLSICNQLEKRNDENQTFKSKIPLLD
KLDEKCERFYQIHKKLTQLEWKTVQAEPTPSKIKDINHHSFRAYTENDSN
KAIQIQAVYRGYRVRIAYLSFKKYMTSSSVMHDGMDDVTSEFDYEEEINL
EDFEMNENDDLLEDWQTPSTPLNLNKNVPLPGLNGRLGSSKPAADQSEFK
EAWKRTTTSVTNEISAIGQSDGHVIDGRLSSALDSTRSKYSRKVDEELAS
EWGFQNDMTTELMKKRARKMGSNNKKKRLDPRKRYELFKKMDRTLNHTVI
SPRPKQPYRKSYFESNATPRQLDSDAKDFVYSWICNQPIVHQDHLDNASL
TRDFQTANETQQNTDAMTQRSSSSTTTTTARKTDCILPALNVTALSGRHV
ALIQSEIHNPKPPAKDKPSSGSSVHQRHNRRRPPPSSSGEEKKSHSAPHP
RVKPLLETNHGKRDTTTMDEKWSNMAYR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | SMART | SM00364 | LRR_bac_2 | coord: 305..324
e-value: 560.0
score: 0.4
coord: 371..390
e-value: 95.0
score: 6.2
coord: 349..368
e-value: 57.0
score: 7.9
coord: 283..302
e-value: 89.0
score: 6.5
coord: 439..458
e-value: 320.0
score: 2.3
coord: 417..436
e-value: 32.0
score: 9.9 |
| None | No IPR available | SMART | SM00365 | LRR_sd22_2 | coord: 393..414
e-value: 440.0
score: 2.2
coord: 305..326
e-value: 0.37
score: 19.8
coord: 349..370
e-value: 190.0
score: 5.1
coord: 283..304
e-value: 32.0
score: 11.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 908..978 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 859..879 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 127..156 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 187..288
e-value: 6.8E-4
score: 18.1
coord: 289..381
e-value: 2.4E-19
score: 68.4 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 382..547
e-value: 1.8E-10
score: 39.6 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | SUPERFAMILY | 52058 | L domain-like | coord: 227..489 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 373..394
score: 5.579 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 419..440
score: 6.518 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 441..462
score: 6.218 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 395..416
score: 6.411 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 329..350
score: 7.712 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 351..372
score: 7.712 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 307..328
score: 7.835 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 285..306
score: 8.775 |
| IPR000048 | IQ motif, EF-hand binding site | PROSITE | PS50096 | IQ | coord: 598..627
score: 8.517 |
Blast
BLAST of TCONS_00066531-protein vs. Swiss-Prot (Human)
Match: LRIQ1 (Leucine-rich repeat and IQ domain-containing protein 1 OS=Homo sapiens GN=LRRIQ1 PE=2 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 4.054e-18 Identity = 56/158 (35.44%), Postives = 86/158 (54.43%), Query Frame = 0
Query: 323 GIEECRNMVYLNLDNNQLISLKGLGHLSKLSWLSLRHNDVTSLPEISLCRRLVKLDVTENNLIEVPQFEDNALLTSLSLDSNTIQHLDGMADCWLPLLIIISASNNRLEDVSPLFNLPHLLQLNVKGNLISNLNN-ISTRENVPFLQQICLVDNPVLE 479
G+E +N+ L LD+NQLI+ KGL + +L HN +T + + C L L + N L E+P E+ LL L LD N+I ++ + WLPLL I+ S N L + PLF+ L +L+V N +S+L + I + L ++ L NP+L+
Sbjct: 964 GLESLKNLQQLILDHNQLINTKGLCDTPTIVYLDCSHNHLTDVEGVENCGLLQILKLQGNYLSELPSLENLVLLRELHLDDNSISTVEAFSSYWLPLLQNITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDLKSAIKWFDACYSLHELSLTGNPLLQ 1121
The following BLAST results are available for this feature:
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