TCONS_00066592-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066592-protein
Unique NameTCONS_00066592-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066592-protein ID=TCONS_00066592-protein|Name=TCONS_00066592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MSSEEYENCLDEFRTYYDQLKSVVKNKLPKLTGEIRKRELRNADRLLEDA
EAQLTQMFEEAQSAPGAYRTSLLSQTRGHKSDLEKLKRELITAKSTSVQS
SSSGSRDDLLGYGGTSATSNFESQQRGMMQEGLDIMNRTSDSVARSQRIA
AETDEYGVQILADLDDQKESLIRVRDKVKQTDSDLTKSRRIIQSIGVRMI
TNKLLLIVIIVLEVIILGAVVYIKYFKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041641XLOC_041641Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066592TCONS_00066592Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007705Vesicle_trsprt_v-SNARE_N
IPR000727T_SNARE_dom
IPR010989SNARE
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 161..181
NoneNo IPR availableCOILSCoilCoilcoord: 40..60
NoneNo IPR availableGENE3D1.20.5.110coord: 123..196
e-value: 3.7E-18
score: 64.9
NoneNo IPR availableGENE3D1.20.58.400coord: 1..90
e-value: 6.6E-16
score: 58.1
NoneNo IPR availablePFAMPF12352V-SNARE_Ccoord: 136..199
e-value: 1.1E-15
score: 57.5
NoneNo IPR availableCDDcd15890SNARE_Vti1bcoord: 134..194
e-value: 2.84277E-18
score: 74.9184
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 125..196
IPR007705Vesicle transport v-SNARE, N-terminalPFAMPF05008V-SNAREcoord: 13..90
e-value: 2.7E-13
score: 50.0
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 133..195
score: 8.58
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 8..91

Blast
[Close]
BLAST of TCONS_00066592-protein vs. Swiss-Prot (Human)
Match: VTI1B (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 6.041e-33
Identity = 81/227 (35.68%), Postives = 138/227 (60.79%), Query Frame = 0 
Query:    2 SSEEYENCLDEFRTYYDQLKSVVKNKLPKLTGEIRKRELRNADRLLEDAEAQLTQMFEEAQSAPGAYRTSLLSQTRGHKSDLEKLKRELITAKSTSVQSSSSGSRDDLLG-YGGTSATSNFESQQRGMMQEGLDIMNRTSDSVARSQRIAAETDEYGVQILADLDDQKESLIRVRDKVKQTDSDLTKSRRIIQSIGVRMITNKLLLIVIIVLEVIILGAVVYIKYFK 227
            SSE +E   + FR  ++ L+ V +  L     E +K+ +R+ D   ++A   L +M EE + AP ++R  ++S+ R ++ DL KL RE+   +ST + ++  G  D   G Y   +   N    QR M+ +G + +NR + S+ RS RIA ETD+ G +I+ +L +Q++ L R + ++  T  +L+KSR+I++S+  ++ TNKLLL +II+LE+ ILG +VY K+F+
Sbjct:    7 SSEHFEKLHEIFRGLHEDLQGVPERLLGTAGTEEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV---RSTPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYKFFR 230
The following BLAST results are available for this feature:
BLAST of TCONS_00066592-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VTI1B6.041e-3335.68Vesicle transport through interaction with t-SNARE... [more]
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