TCONS_00066610-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066610-protein
Unique NameTCONS_00066610-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length201

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066610-protein ID=TCONS_00066610-protein|Name=TCONS_00066610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MEKTCTHYKRRCLLVTPCCNKVYPCRFCHNDSEQHELDRSKIDELVCSQC
STRQPLGTHCKECNILFGMYSCLECRLFDDTDKKQFHCDQCGFCRVGGRE
NFIHCNNCGICMDKAVIGTHSCRSESGKDVCPVCFESVHTSPGSVFVPKC
GHLIHFDCVAMINKYQYYSNARCPLCRLVYINAMNDSNNNVNSVAGEGNE
S
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041659XLOC_041659Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066610TCONS_00066610Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR008913Znf_CHY
IPR013083Znf_RING/FYVE/PHD
IPR017921Znf_CTCHY
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 131..176
e-value: 2.6E-6
score: 37.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 130..177
e-value: 4.9E-8
score: 33.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 131..177
score: 12.165
IPR008913Zinc finger, CHY-typePFAMPF05495zf-CHYcoord: 5..77
e-value: 1.5E-18
score: 66.9
IPR008913Zinc finger, CHY-typePROSITEPS51266ZF_CHYcoord: 1..65
score: 21.877
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 117..201
e-value: 1.2E-11
score: 43.6
IPR017921Zinc finger, CTCHY-typePROSITEPS51270ZF_CTCHYcoord: 67..130
score: 22.612
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 129..180
NoneNo IPR availableSUPERFAMILY161245Zinc hairpin stackcoord: 68..123
NoneNo IPR availableSUPERFAMILY161219CHY zinc finger-likecoord: 4..67

Blast
[Close]
BLAST of TCONS_00066610-protein vs. Swiss-Prot (Human)
Match: ZN363 (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.247e-48
Identity = 79/175 (45.14%), Postives = 104/175 (59.43%), Query Frame = 0 
Query:    2 EKTCTHYKRRCLLVTPCCNKVYPCRFCHNDSEQHELDRSKIDELVCSQCSTRQPLGTHCKECNILFGMYSCLECRLFDDTDKKQFHCDQCGFCRVGGRENFIHCNNCGICMDKAVIGTHSCRSESGKDVCPVCFESVHTSPGSVFVPKCGHLIHFDCVAMINKYQYYSNARCPLC 176
            ++ C HY R CLL  PCC+K+Y CR CH+++E H+LDR K+ E+ C  C   Q     C+EC+ LFG Y C  C LF D DKKQ+HC+ CG CR+G +E+F HC  C +C+   + G H C     +  CP+C E +HTS     V  CGHL+H  C   + K  Y    RCPLC
Sbjct:   17 QRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLF-DKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY----RCPLC 186
The following BLAST results are available for this feature:
BLAST of TCONS_00066610-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3631.247e-4845.14RING finger and CHY zinc finger domain-containing ... [more]
back to top