TCONS_00066749-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066749-protein
Unique NameTCONS_00066749-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066749-protein ID=TCONS_00066749-protein|Name=TCONS_00066749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MSSRRSYGGGSKLSCPNHPNAHLVEDHRAGDMVCPECGLVVGDRVVDVGS
EWRTFSNESNGQDRSRVGGNENPFLSGQDLSTMVGTDRASGSGLDLQNYA
RYQNRSGISGSDRSLLNAIREIGTMASRINLPKNITDRANLLFKQVHDQR
SLRGRSNDAIASACLYIACRQDGVPRTFKEICAISKIPKKEIGRCFKLIL
KNLEANVSVITSGDFMVCTFHCSDKKSALMMKRIT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041745XLOC_041745Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066749TCONS_00066749Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000812TFIIB
IPR013763Cyclin-like
IPR013150TFIIB_cyclin
IPR013137Znf_TFIIB
IPR023486TFIIB_CS
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0070897DNA-templated transcriptional preinitiation complex assembly
Vocabulary: Molecular Function
TermDefinition
GO:0017025TBP-class protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070897 DNA-templated transcriptional preinitiation complex assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0017025 TBP-class protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPRINTSPR00685TIFACTORIIBcoord: 188..203
score: 57.5
coord: 49..62
score: 54.29
coord: 63..84
score: 48.79
coord: 162..181
score: 70.0
coord: 27..47
score: 54.92
IPR013763Cyclin-likeSMARTSM00385cyclin_7coord: 120..201
e-value: 1.5E-11
score: 54.3
IPR013763Cyclin-likeGENE3D1.10.472.10coord: 95..218
e-value: 2.3E-22
score: 79.1
IPR013763Cyclin-likeSUPERFAMILY47954Cyclin-likecoord: 115..208
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 123..192
e-value: 1.4E-24
score: 85.8
NoneNo IPR availableGENE3D2.20.25.10coord: 8..59
e-value: 8.3E-18
score: 63.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..76
NoneNo IPR availableCDDcd00043CYCLINcoord: 118..200
e-value: 3.94936E-14
score: 64.182
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 12..58
IPR013137Zinc finger, TFIIB-typePFAMPF08271TF_Zn_Ribboncoord: 14..55
e-value: 8.1E-15
score: 54.0
IPR013137Zinc finger, TFIIB-typePROSITEPS51134ZF_TFIIBcoord: 11..42
score: 9.665
IPR023486Transcription factor TFIIB, conserved sitePROSITEPS00782TFIIBcoord: 154..169

Blast
[Close]
BLAST of TCONS_00066749-protein vs. Swiss-Prot (Human)
Match: TF2B (Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 2.747e-105
Identity = 146/236 (61.86%), Postives = 183/236 (77.54%), Query Frame = 0 
Query:    1 MSSRRSYGGGSKLSCPNHPNAHLVEDHRAGDMVCPECGLVVGDRVVDVGSEWRTFSNESNGQDRSRVGGNENPFLSGQDLSTMVGTDRASGSGLDLQNYARYQNRSGISGSDRSLLNAIREIGTMASRINLPKNITDRANLLFKQVHDQRSLRGRSNDAIASACLYIACRQDGVPRTFKEICAISKIPKKEIGRCFKLILKNLEANVSVITSGDFM--VCTFHCSDKKSALMMKRI 234
            M+S        +++CPNHP+A LVED+RAGDM+CPECGLVVGDRV+DVGSEWRTFSN+   +D SRVG ++NP LS  DLSTM+G    + S  +  N ++YQNR  +S SDR+++NA +EI TMA RINLP+NI DR N LFKQV++Q+SL+GR+NDAIASACLYIACRQ+GVPRTFKEICA+S+I KKEIGRCFKLILK LE +V +IT+GDFM   C+  C  K+  +    I
Sbjct:    1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGN-SKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHI 235
The following BLAST results are available for this feature:
BLAST of TCONS_00066749-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2B2.747e-10561.86Transcription initiation factor IIB OS=Homo sapien... [more]
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