TCONS_00066803-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066803-protein
Unique NameTCONS_00066803-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066803-protein ID=TCONS_00066803-protein|Name=TCONS_00066803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MNFKNPDMNKFSEIIYVVRIKRKPLFLITSLIMPKFGITLISLLAHVIPA
ASGERILMLIDLMLVLALFLTNVMDIIPGAAGEVPFFTYFLLLTLIGMVT
NIVTMVYTLSIYFANCTVLEMPRWLRYYVLDHLAPSMGYRDRYTTPKWMI
KLMAIEEHCQRNQQQNPINSILGKRHPGRLWGATELRSNVIEIVDDLSQG
HSLSSLNLCLLSQKLSLILDWLKEEERKRILKDDWLLVAKALDQVTLYIN
CSILATVIFWFFYKAYSCSLVN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041768XLOC_041768Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066803TCONS_00066803Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006029Neurotrans-gated_channel_TM
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 31..260
e-value: 9.9E-16
score: 58.4
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 24..264
NoneNo IPR availableGENE3D1.20.58.390coord: 24..270
e-value: 4.8E-20
score: 71.2

Blast
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BLAST of TCONS_00066803-protein vs. Swiss-Prot (Human)
Match: ACHA3 (Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 1.150e-17
Identity = 67/261 (25.67%), Postives = 129/261 (49.43%), Query Frame = 0 
Query:   11 FSEIIYVVRIKRKPLFLITSLIMPKFGITLISLLAHVIPAASGERILMLIDLMLVLALFLTNVMDIIPGAAGEVPFFTYFLLLTLIGMVTNIVTMVYTLSIYFANCTVLEMPRWLRYYVLDHLAPSMGYRDRYTT---------PKWMIKL-------MAIEEHCQRNQQQNPINSILGKRHPGRL----WGATELRSNVIEIVDDLSQGHSLSSLNLCLLS--QKLSLILDWLKEEERKRILKDDWLLVAKALDQVTLYI 249
            + +I Y + I+R PLF   +LI+P   I+ +++L   +P+  GE++ + I ++L L +FL  + + IP  +  +P    +LL T+I +  +IV  V+ L++++   T   MP W++   L+ L P + +  R T+         P +  +L        A  + C+        + + G  H  R+    + A   RS+  E VD +    SLS+L+  +    Q +  I + +K +   + ++DDW  VA  +D++ L++
Sbjct:  228 YPDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHYRTPTTHTMPSWVKTVFLN-LLPRVMFMTRPTSNEGNAQKPRPLYGAELSNLNCFSRAESKGCKEGYPCQ--DGMCGYCHHRRIKISNFSANLTRSSSSESVDAV---LSLSALSPEIKEAIQSVKYIAENMKAQNEAKEIQDDWKYVAMVIDRIFLWV 482
The following BLAST results are available for this feature:
BLAST of TCONS_00066803-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA31.150e-1725.67Neuronal acetylcholine receptor subunit alpha-3 OS... [more]
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