TCONS_00066856-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066856-protein
Unique NameTCONS_00066856-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1092

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066856-protein ID=TCONS_00066856-protein|Name=TCONS_00066856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1092bp
MIQQAFLCLFMVLSTHGYNLDYEYAVVKKGSTDGELFGFSVLQHKENKNN
WMLVGAPKGSNQFLRGQDQESGTVFKCNATSPTLECTQQVPFDEASSSGV
ESKKDQWLGVSLTSGGNDDAVMSCGHRYNYHGSSSKSYSLLIGQCYTVED
NLEYGSGAFSPCKEPLKPFLGGGSTKTPNYQNYGQCLSGLGTGIQKSDGD
ESDILIGALGALSLTGRIFKERSDNTNPKWGPTNNEAKFQDSYFGYAVAM
GKFTVNQGEVAVGGPRHESHGKVLIYKNNAFKDISSEPAFDEKIIQVPSA
DYEDAEVQIASGFGIALTAIDIDHDGFDELIVGAPFYADKKKPNMGRVYV
FGLKDNKFALKKSFYGGKEAYSSFGYSVANVGDLNLDGYDDLVVGAPHRE
DNKGVVFIYEGTNIGLAEEPQIIKAEEVVSTLASAGTLTLGGFGRSVAGG
LDLDNNGYKDVLVGAYSTDHAVLLRSRPIISPHATLQFDPPQIDPREENK
NCDKGGPTKTVCFNVKLCHNITGQEFSKTTIKSVNMKFTLTADAGRPNDP
RVFITDKSNVLEFVAPSYSNEIKCYEIKDLYLEFGPDGTIAEYPDVKFTV
AYSIPYDEAAGSPKPVRTDVSVASLDAYPILHKKFKDGHAIDAGLEGTQL
TFKRECTQCIPDLKVTSAQSVYSLRYRGTEFEFNITIENNGKDPAYAVDL
AFDAPESMKVALVREVGSTKGRDCSNNTCLNIIPKLPSNSKKHFLISLNT
EKYLPEHSNTAMIKVSSINDEQPATLADNEKIISFDIKVVADISLIGGKS
TQSVAYTGKIKGEKAMEGFDDIGQEIEHKFAVRNRGPDLLPSAILTINWP
ALTLSGKHLLYLIDVTKSPRMVCEQIPVNTAEITSRARRGNFILPVGGIK
EELIARVRRQADNTDNNSTTTPTPTTDGGDGGTGGINVVPVSKPREGITL
SCPDKTAICQTIRCEITNLPSKISEQIVFRSRLWEPSLLLDYYGEVLTIV
SNGKVELGQNISYITDPDPNNNYNDVYTIINPVLVKAKSKIAVWIIALAV
VAGIILLALLVFGLFKLGFFKRNRKPEYYGQKKEQEKSLLKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041814XLOC_041814Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066856TCONS_00066856Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000413Integrin_alpha
IPR013519Int_alpha_beta-p
IPR013649Integrin_alpha-2
IPR013517FG-GAP
IPR018184Integrin_alpha_C_CS
IPR032695Integrin_dom
Vocabulary: Cellular Component
TermDefinition
GO:0008305integrin complex
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0008305 integrin complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1086..1092
NoneNo IPR availableGENE3D2.60.40.1530coord: 791..1043
e-value: 6.2E-36
score: 123.2
NoneNo IPR availableGENE3D2.60.40.1460coord: 480..657
e-value: 3.2E-13
score: 49.8
NoneNo IPR availableGENE3D1.20.5.930coord: 1044..1074
e-value: 3.4E-12
score: 45.4
NoneNo IPR availableGENE3D2.130.10.130coord: 18..479
e-value: 2.1E-90
score: 303.3
NoneNo IPR availableGENE3D2.60.40.1510coord: 658..790
e-value: 1.1E-10
score: 41.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 909..933
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 485..504
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 18..478
IPR000413Integrin alpha chainPRINTSPR01185INTEGRINAcoord: 241..253
score: 51.59
coord: 373..397
score: 51.12
coord: 443..464
score: 55.32
coord: 470..489
score: 36.1
coord: 1053..1072
score: 58.17
coord: 306..326
score: 39.02
IPR013519Integrin alpha beta-propellorSMARTSM00191int_alpha_rptcoord: 309..363
e-value: 2.9E-7
score: 40.1
coord: 240..292
e-value: 1.8E-4
score: 30.9
coord: 33..93
e-value: 0.0055
score: 25.9
coord: 370..423
e-value: 1.4E-12
score: 57.8
coord: 439..495
e-value: 0.0064
score: 25.7
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 231..285
score: 7.825
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 299..358
score: 10.435
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 23..86
score: 8.869
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 94..157
score: 7.193
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 429..491
score: 10.861
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 359..418
score: 12.42
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 176..230
score: 6.495
IPR013649Integrin alpha-2PFAMPF08441Integrin_alpha2coord: 476..964
e-value: 2.0E-50
score: 172.0
IPR013517FG-GAP repeatPFAMPF01839FG-GAPcoord: 313..351
e-value: 6.6E-8
score: 32.4
coord: 374..408
e-value: 7.4E-7
score: 29.1
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved sitePROSITEPS00242INTEGRIN_ALPHAcoord: 1065..1072
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 942..1046
coord: 790..913
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 658..781
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 478..579

Blast
[Close]
BLAST of TCONS_00066856-protein vs. Swiss-Prot (Human)
Match: ITA3 (Integrin alpha-3 OS=Homo sapiens GN=ITGA3 PE=1 SV=5)

HSP 1 Score: 261.922 bits (668), Expect = 1.228e-72
Identity = 282/1123 (25.11%), Postives = 485/1123 (43.19%), Query Frame = 0 
Query:    4 QAFLCLFMVLSTHG------YNLDYEYAVVKKGSTDGELFGFSVLQHKENKNN---WMLVGAPKGSNQFLRGQDQESGTVFKCNATSPTLECTQQVPFDEASSSGVESKKDQWLGVSLTSGGNDDAVMSCGHRY-NYHGSSSKSYSLLIGQCYTVEDNLEYGSGAFSPCKEPLKPFLGGGSTKTPNYQNYGQCLSGLGTGIQKSDGDESDILIGALGALSLTGR---IFKERSDNTNPKWGPTNNEAKFQDSYFGYAVAMGKFTVNQGEVAV--GGPRHESHGKVLIYKNNAFKDISSEPAFDEKIIQVPSADYEDAEVQIASGFGIALTAIDIDHDGFDELIVGAPFYADKKKPNMGRVYVF-GLKDNKFALKKSFYGGKEAYSSFGYSVANVGDLNLDGYDDLVVGAPHREDNKGVVFIYEGTNIGLAEEP-QIIKAEEVVSTLASAGTLTLGGFGRSVAGGLDLDNNGYKDVLVGAYSTDHAVLLRSRPIIS-PHATLQFDPPQIDPREENKNCDKGGPTKTVCFNVKLCHNITGQEFSKTTIKSVNMKFTLTADAGRPNDPRVFITDKSNVLE--FVAPSYSNEIKCYEIKDLYLEFGPDGTIAEYPDVKFTVAYSIPYDEAAGSPKPVRTDVSVASLDAYPILHKKFKDGHAIDAGLEGTQLTFKREC---TQCIPDLKVTSA------QSVYSLRY----RGTEFEFNI----TIENNGKDPAYAVDLAFDAPESMKVALVREVGSTKGRDCSNNTCLNIIPKLPSNSKKHFLISLNTEKYLPEHSNTAMIKVSSINDEQPATLADNEKIISFDIKVVADISLIGGKSTQSVAYTGKIKGEKAMEGFDDIGQEIEHKFAVRNRGPDL--LPSAILTINWPALTLSGKHLLYLIDVTKSPRMVCEQIPVNTAEITSRARRGNFILPVGGIKEELIARVRRQADNTDNNSTTTPTPTTDGGDGGTGGINVVPVSKPREGITLSCPDKTAICQTIRCEITNLPSKISEQIVFRSRLWEPSLLLDYYGEVLTIVSNGKVELGQNISYITDPDPNNNYNDVYTIINPVLVKAKSKIAVWIIALAVVAGIILLALLVFGLFKLGFFKRNRKPEYYGQKKEQEK 1087
            +  LC   ++   G      +NLD  + VVK+    G LFG+SV  H++ +      +L GAP+       G    +G V+ C  T+   +C +++     +  G    +D WLGV++ S G    V+ C HRY     S S+    ++G+CY   ++LE  S       +  + +         +Y   G C  G   G       ++ +  GA GA +  G    I ++  D +   +    ++      Y GY + +G F ++   + +  G PRH   G V +    A  D+      +                Q+ + FG A+   D+++DG+ +L+VGAP+Y ++K+   G +YVF       F    S      + S+FG SVA++GD+N DG+ D+ VGAP   +  G V+IY  ++ GL  +P Q+I  E++       G   L  FG S++G +D+D N Y D+LVG+ S DH VLLR+RP+I+  H TL   P  +DP      C     T T C  V+LC        +    +++ + +TL AD  R      F   +S V    F  P    E++C +++ L +    D    +   +  ++ YS+P         P R  + + SLDAYPIL++      A++     T++ F++EC    +C  +L++ +A      Q +  L+Y    R      N+    T E +G+D A+   L    P ++ ++ VR  G+ +  +       N   +   N +   LI+      +  H+    +++          L      +  D  +   +S++  +  QS  + G + GE  M+  +D+G  ++++F V   G  L  L + +L + WP    +GK LLY                    EIT          P G +   L   +    D   +           GG  G   + +    K +    L+C    A C  + C I + P  +   +  ++R+W  + + DY  +   +  NG   L    S  T    N        I + ++ +  ++I +W++ +AV AG++LL L++  L+K GFFKR R    Y  K+++ +
Sbjct:   13 RLMLCALALMVAAGGCVVSAFNLDTRFLVVKEAGNPGSLFGYSVALHRQTERQQRYLLLAGAPR-ELAVPDGYTNRTGAVYLCPLTAHKDDC-ERMNITVKNDPGHHIIEDMWLGVTVASQGPAGRVLVCAHRYTQVLWSGSEDQRRMVGKCYVRGNDLELDS------SDDWQTYHNEMCNSNTDYLETGMCQLGTSGGFT-----QNTVYFGAPGAYNWKGNSYMIQRKEWDLSEYSYKDPEDQGNL---YIGYTMQVGSFILHPKNITIVTGAPRHRHMGAVFLLSQEAGGDLRRRQVLEGS--------------QVGAYFGSAIALADLNNDGWQDLLVGAPYYFERKEEVGGAIYVFMNQAGTSFPAHPSLLLHGPSGSAFGLSVASIGDINQDGFQDIAVGAPF--EGLGKVYIYHSSSKGLLRQPQQVIHGEKL-------GLPGLATFGYSLSGQMDVDENFYPDLLVGSLS-DHIVLLRARPVINIVHKTLVPRPAVLDP----ALC-----TATSCVQVELCFAYNQSAGNPNYRRNITLAYTLEADRDRRPPRLRFAGSESAVFHGFFSMP----EMRCQKLELLLM----DNLRDKLRPIIISMNYSLPLR------MPDRPRLGLRSLDAYPILNQ----AQALE---NHTEVQFQKECGPDNKCESNLQMRAAFVSEQQQKLSRLQYSRDVRKLLLSINVTNTRTSERSGED-AHEALLTLVVPPALLLSSVRPPGACQANETIFCELGNPFKR---NQRMELLIAFEVIG-VTLHTRDLQVQLQLSTSSHQDNLWPMILTLLVDYTLQTSLSMVNHR-LQSF-FGGTVMGESGMKTVEDVGSPLKYEFQVGPMGEGLVGLGTLVLGLEWPYEVSNGKWLLY------------------PTEITVHGNGSWPCRPPGDLINPLNLTLSDPGDRPSSPQRRR-RQLDPGGGQGPPPVTLAAAKKAKSETVLTCATGRAHCVWLECPIPDAP--VVTNVTVKARVWNSTFIEDYR-DFDRVRVNGWATLFLRTSIPTINMENKTTWFSVDIDSELVEELPAEIELWLVLVAVGAGLLLLGLIILLLWKCGFFKRARTRALYEAKRQKAE 1036
The following BLAST results are available for this feature:
BLAST of TCONS_00066856-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITA31.228e-7225.11Integrin alpha-3 OS=Homo sapiens GN=ITGA3 PE=1 SV=... [more]
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