TCONS_00067546-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067546-protein
Unique Name	TCONS_00067546-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	552

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067546-protein ID=TCONS_00067546-protein|Name=TCONS_00067546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp
MAAVKSSSENVFSYEEIDVFTVPHNRMKKILLDVSNQTKKTDFNNQQSFG
SLLKCLSSSFLELKHHEEIENKCIMKVLKRKLQGESLKKLLIHLHAHSHI
SDILKLVRQVEKDFQCGVNQDLNILGSTLNDSLQEFYDEYVPHMKEEEQV
FQPMLMEMLPLNELHHIQQVVLQLHHFDNIGKNVSQTLSKELEKILISKP
SDDQNENIDTVSEGMTIEKLPTEMWSDIFSYLGPRDLGRCAQVSKKWNSI
AYTGSFWSTLHPRRWAHGDWTFGKQLSSDDCNCDCEPNYELITFSSEEKD
NYSSGSCSESDSEETQQQLSSKDDPVQRELKVLNGIGRYLLPRVGASVKT
LVLECSKAITNGLLFRMLSQCRNLEYLDVSQTIVSDLGLMGLFKDGCRNM
KYLDVSGCRGITDKTLIKLSTALGSKKSSSNACSNCTCFQQQRIVGDKSP
PSPRQPKQLEILRLSGCFKITDAGLRALTKHGCLQKLRHLDLSGCINVTS
AGIENLVTSCPNLDLNELSYCDNIATDYDYSANGCQNQGCLNRVCCRTGG
LV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042187	XLOC_042187	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067546	TCONS_00067546	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR001810	F-box_dom
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt
IPR012312	Haemerythrin-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 484..509 e-value: 0.0021 score: 27.3 coord: 456..481 e-value: 0.0071 score: 25.6 coord: 371..395 e-value: 40.0 score: 9.8 coord: 397..422 e-value: 0.015 score: 24.5
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 220..260 e-value: 4.5E-8 score: 42.8
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 217..261 e-value: 9.1E-13 score: 47.8
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 214..260 score: 13.922
IPR001810	F-box domain	SUPERFAMILY	81383	F-box domain	coord: 205..273
None	No IPR available	GENE3D	1.20.1280.50		coord: 224..329 e-value: 5.4E-17 score: 61.4
None	No IPR available	GENE3D	1.20.120.520		coord: 11..223 e-value: 3.1E-9 score: 36.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 299..325
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 345..536
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 341..439 e-value: 8.5E-10 score: 37.6 coord: 440..545 e-value: 1.1E-11 score: 43.7
IPR001611	Leucine-rich repeat	PFAM	PF00560	LRR_1	coord: 486..504 e-value: 0.43 score: 11.2
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 397..419 e-value: 0.099 score: 12.6
IPR012312	Haemerythrin-like	PFAM	PF01814	Hemerythrin	coord: 18..155 e-value: 4.1E-6 score: 27.3

Blast

[Close]

BLAST of TCONS_00067546-protein vs. Swiss-Prot (Human)
Match: FBXL5 (F-box/LRR-repeat protein 5 OS=Homo sapiens GN=FBXL5 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 1.220e-68
Identity = 151/417 (36.21%), Postives = 234/417 (56.12%), Query Frame = 0

Query:   15 EEIDVFTVPHNRMKKILLDVSNQTKKTDFNNQQSFGSLLKCLSSSFLELKHHEEIENKCIMKVLKRKLQGESLKKLLIHLHAHSHISDILKLVRQVEKDFQCGVNQDLNILGSTLNDSLQEFYDEYVPHMKEEEQVFQPMLMEMLPLNELHHIQQVVLQLHHFDNIGKNVSQTLS----KELEKILISKPSDDQNENIDTVSEGMT-IEKLPTEMWSDIFSYLGPRDLGRCAQVSKKWNSIAYTGSFWSTLHPRRWAHGDWTFGKQLSSDDCNCDCEPNYELITFSSEEKDNYSSG-SCSESDSEETQQQLSSKDDPVQRELKVLNGIGRYLLPRVGASVKTLVLECSKAITNGLLFRMLSQCRNLEYLDVSQTIVSDLGLMGLFKDG-CRNMKYLDVSGCRGITDKTLIKLSTALG 424
            EE+DVFT PH RMK+++    ++  KT+F+N   F +LL+ L ++F E K HE+IEN+ I+ +L+++ Q       + ++H+ + +S++L L  +  K+ +    Q LN     L + L+ F  +++PHMKEEE+VFQPMLME     EL  I++ V+  H        + + LS     E  +       D++++    VSE  T I  LP E+   IFSYL P++L RC+QVS KW+ +  TGS W  L+P  WA GDW  G          D EP+ E +    +E   +      ++ D  E   + S      Q E ++L+G+   +LP VG SVKTLVL  S A+++ ++ ++L  C NLE+LD++QT +SD         G C+++++LD+SGC  ITD  L K+S ALG
Sbjct:    6 EEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQ------TIYNVHSDNKLSEMLSLFEKGLKNVKNEYEQ-LNY-AKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIAQHCSQKDTAELLRGLSLWNHAEERQKFFKYSVDEKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLYPVHWARGDWYSGPA-----TELDTEPDDEWVKNRKDESRAFHEWDEDADIDESEESAEESIAISIAQMEKRLLHGLIHNVLPYVGTSVKTLVLAYSSAVSSKMVRQILELCPNLEHLDLTQTDISDSAFDSWSWLGCCQSLRHLDLSGCEKITDVALEKISRALG 409

HSP 2 Score: 101.679 bits (252), Expect = 1.595e-22
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 0

Query:  457 KQLEILRLSGCFKITDAGLRALTKHGCLQKLRHLDLSGCINVTSAGIENLVTSCPNLDLNELSYCDNIATDYDYSANGCQNQGCLNRVCCRTG 549
            + L  L LSGC++ITD GLR LT  G L  L HL+LSGC+ +T AG+++LV++CP+L+     YCDNI   +  +A+GCQN  C  R CCR+G
Sbjct:  598 RVLLFLSLSGCYQITDHGLRVLTLGGGLPYLEHLNLSGCLTITGAGLQDLVSACPSLNDEYFYYCDNINGPHADTASGCQNLQCGFRACCRSG 690

The following BLAST results are available for this feature:

BLAST of TCONS_00067546-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067546-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBXL5	1.220e-68	36.21	F-box/LRR-repeat protein 5 OS=Homo sapiens GN=FBXL...	[more]

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TCONS_00067546-protein (polypeptide) - C. hemisphaerica