TCONS_00068174-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068174-protein
Unique NameTCONS_00068174-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068174-protein ID=TCONS_00068174-protein|Name=TCONS_00068174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MLSNRSNNEKSLKSVSDDLSDIRNDLTDAIKYNDEKLALVADKLQQLEVR
VDEINADMRSSKNGSLLWKVGNFTELLERSHQDHQTFVASDFVYTGIYGY
KLEFRLYPYGVGLGEGTHLSLYVLVHKTEHDLLLHWPFEQKVKVKLLNMN
ESSSKREHHIATIGPDRHSSSFVRPLHEHNPGWGFPTFLSHRDLQKKTFL
RENCLFIKLLVEPYDALDIFKQSYD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042551XLOC_042551Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068174TCONS_00068174Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..64
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 68..194
e-value: 5.8E-11
score: 52.4
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 63..211
score: 21.951
IPR008974TRAF-likeGENE3D2.60.210.10coord: 28..224
e-value: 2.4E-34
score: 118.2
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 62..216

Blast
[Close]
BLAST of TCONS_00068174-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.911e-30
Identity = 69/217 (31.80%), Postives = 121/217 (55.76%), Query Frame = 0 
Query:    2 LSNRSNNEKSLKSVSDDLSDIRNDLTDAIKYNDEKLALVADKLQQLEVRVDEINADMRSSKNGSLLWKVGNFTELLERSHQDHQTFVASDFVYTGIYGYKLEFRLYPYGVGLGEGTHLSLYVLVHKTEHDLLLHWPFEQKVKVKLLNMNESSSKREHHIATIGPDRHSSSFVRPLHEHNPGWGFPTFLSHRDLQKKTFLRENCLFIKLLVEPYDALD 218
            L NR    +S+   +  ++     L   +  +D+ L++   +L  +++R   +     +S NG L+WK+ ++    + +       + S   YTG +GYK+  R+Y  G G+G+GTHLSL+ ++ + E+D LL WPF+QKV + L  M++ SS+R H      PD +SSSF +P  E N   G P F++   L+  T+++++ +FIK++V+  D  D
Sbjct:  357 LQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET---ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLML--MDQGSSRR-HLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPD 567
The following BLAST results are available for this feature:
BLAST of TCONS_00068174-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF32.911e-3031.80TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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