TCONS_00068384-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00068384-protein
Unique Name	TCONS_00068384-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	336

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00068384-protein ID=TCONS_00068384-protein|Name=TCONS_00068384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MQKQCNRMFSYSQILYRSSNQILHRRSRNILQQIRKMTGQLELFQNIGLT
EQKAKETAKNKGLAERLEKLIKQTSGSDGSSVDKSVGTLLYTLASGSIEL
ERLKFVVDYVQKGKIASVQQLNAATTYLKSNPTTNGNDQAFKSACGIDVS
YTPDQIEDCVEEILKKHKAKVIEQRYQFNTGMLLGEVSKNLKFVDMKKVK
SEIDMQLLDLLGPKTEADKNPPKKGKQNKEEGGKKKEVKKEKEAPKVLDR
KTIQNMIDPKTIYLTGEAAKFHKPGENYTTENYIMTPTTMNHMKEHLDTY
GKQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042675	XLOC_042675	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00068384	TCONS_00068384	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007638	Gln-tRNA-synth_Ib_RNA-bd_2
IPR014729	Rossmann-like_a/b/a_fold
IPR020058	Glu/Gln-tRNA-synth_Ib_cat-dom
IPR007639	Gln-tRNA-synth_Ib_RNA-bd_N
IPR001412	aa-tRNA-synth_I_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0004819	glutamine-tRNA ligase activity
GO:0000166	nucleotide binding
GO:0016876	ligase activity, forming aminoacyl-tRNA and related compounds
GO:0004812	aminoacyl-tRNA ligase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006425	glutaminyl-tRNA aminoacylation
GO:0043039	tRNA aminoacylation
GO:0006418	tRNA aminoacylation for protein translation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006425	glutaminyl-tRNA aminoacylation
biological_process	GO:0043039	tRNA aminoacylation
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004819	glutamine-tRNA ligase activity
molecular_function	GO:0016876	ligase activity, forming aminoacyl-tRNA and related compounds
molecular_function	GO:0000166	nucleotide binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..245
None	No IPR available	SUPERFAMILY	52374	Nucleotidylyl transferase	coord: 304..336
IPR007638	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2	PFAM	PF04557	tRNA_synt_1c_R2	coord: 199..296 e-value: 1.0E-23 score: 83.9
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620		coord: 299..336 e-value: 1.4E-11 score: 43.8
IPR020058	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	PFAM	PF00749	tRNA-synt_1c	coord: 303..336 e-value: 1.9E-14 score: 53.2
IPR007639	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal	PFAM	PF04558	tRNA_synt_1c_R1	coord: 41..195 e-value: 6.0E-44 score: 149.8
IPR001412	Aminoacyl-tRNA synthetase, class I, conserved site	PROSITE	PS00178	AA_TRNA_LIGASE_I	coord: 310..321

Blast

[Close]

BLAST of TCONS_00068384-protein vs. Swiss-Prot (Human)
Match: SYQ (Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 5.674e-88
Identity = 143/296 (48.31%), Postives = 194/296 (65.54%), Query Frame = 0

Query:   41 LELFQNIGLTEQKAKETAKNKGLAERLEKLIKQTSGSDGSSVDKSVGTLLYTLASGSIELERLKFVVDYVQKGKIASVQQLNAATTYLKSNPTTNGNDQAFKSACGIDVSYTPDQIEDCVEEILKKHKAKVIEQRYQFNTGMLLGEVSKNLKFVDMKKVKSEIDMQLLDLLGPKTEADKNPPKKGKQNKEEGGKKKEVKKEKEAPKVLDRKTIQNMIDPKTIYLTGEAAKFHKPGENYTTENYIMTPTTMNHMKEHLDTYGKQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNG 336
            L LF ++GL+EQKA+ET KN  L+ +L +   Q   + GS++DK+ G LLY LAS   +  RL F+V Y+   KI +  QL+AA  Y++S+P    +   F+  CG+ V  TP+QIE+ VE  + +H+ +++ +RY FN G+L+GE    LK+ D K +K+E+DMQ+L LLGPK EAD     K  + + E   ++  K   E  +  D +T+  M       L GEA KFHKPGENY T  Y++TP TMN +K+HL+  G Q+RTRFPPEPNGILHIGHAKAINFNFGYAKANNG
Sbjct:    7 LSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLASRLRDTRRLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPEQIEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPKLEADLEKKFKVAKARLEETDRRTAKDVVENGETAD-QTLSLMEQ-----LRGEALKFHKPGENYKTPGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNG 296

The following BLAST results are available for this feature:

BLAST of TCONS_00068384-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00068384-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYQ	5.674e-88	48.31	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=...	[more]

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TCONS_00068384-protein (polypeptide) - C. hemisphaerica