TCONS_00068625-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068625-protein
Unique NameTCONS_00068625-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length202

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068625-protein ID=TCONS_00068625-protein|Name=TCONS_00068625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MSLFYQMKQPLVSDDDEDEFEHDDDYEANNKKPASGGAKPPAGGMGPLSG
GSRPPPGGHVIQASDDDDEEDDDEEEDEDESSDDDGKGGKNHEGTYDPAE
YEHLPVSQEIRELFQYITRYTPQSIDLDYKMKPFIPDYIPAVGDIDAFLK
VMRPDGKAETLGLQILDEPAAKQSDPTVLDLQLRAIAKQPSTKQMVIELF
IK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042806XLOC_042806Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068625TCONS_00068625Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022088Intraflagellar_transp_cmplxB
Vocabulary: Biological Process
TermDefinition
GO:0042073intraciliary transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042073 intraciliary transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022088Intraflagellar transport complex B protein 46PFAMPF12317IFT46_B_Ccoord: 96..195
e-value: 5.2E-48
score: 163.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..101

Blast
[Close]
BLAST of TCONS_00068625-protein vs. Swiss-Prot (Human)
Match: IFT46 (Intraflagellar transport protein 46 homolog OS=Homo sapiens GN=IFT46 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.003e-47
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 0 
Query:   89 GKNHEGTYDPAEYEHLPVSQEIRELFQYITRYTPQSIDLDYKMKPFIPDYIPAVGDIDAFLKVMRPDGKAETLGLQILDEPAAKQSDPTVLDLQLRAIAKQPSTKQ 194
            G   EG YDPA+YEHLPVS EI+ELFQYI+RYTPQ IDLD+K+KPFIPD+IPAVGDIDAFLKV RPDGK + LGL +LDEP+ KQSDPTVL L L   +KQ +  Q
Sbjct:   57 GAPLEGAYDPADYEHLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQ 162
The following BLAST results are available for this feature:
BLAST of TCONS_00068625-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT462.003e-4771.70Intraflagellar transport protein 46 homolog OS=Hom... [more]
back to top