TCONS_00068636-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068636-protein
Unique NameTCONS_00068636-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068636-protein ID=TCONS_00068636-protein|Name=TCONS_00068636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=633bp
MGKLASDTTVDQKPKEKPKTKKEKHMYPRKLVIRRLPTSLNEETLKEELG
NIPEYEYFYFTTGDTSFGMQPYSRAYISFKNYDDVYDFRNKFDGHLFYDT
RGREFSAVVEFAPCQLVPKERQKKDHKTGTLEKDPEFIQFLESLDKEEEK
LPSAEIYIEEIEAAKAIDKNKVKFTTPLIDYLKEKRDVRLAAIAQKEKER
KEREQKRREQRDKKQNKHEEQRSERKSTDRSSNRDSKKNDERKDKYKDKE
KEESNSKSDKRKDKKDNNTKQQDRSSSASNNSKDKDDHREKEKKERLGEG
GGGGGGGKRGPRERASDRKKGRNNNDNRQNEQRSLSSAKNEKYPSSSKDQ
SKDTTKDKSSSSSSSSNKDSSKESSKKENRRLTPPEKGSRGESPEKSAKK
DKRNKERDTSDDTPTSSSTTASQAASKDNTPEAVNSSEKASPNKNNRKPR
PEMKIYRPPSERPSSGSSKNVTSSSEKDFDDRSSKDSSSDSKRGSSTSSK
SNDGGSKNNKPPRYRDDRRSNRDRDRDRDRDRYYDRHDRYNDSHESRHYS
DNRNSKRGSDYNEKSGNRDKEKRDDSSSTRPQSSKNKNNESSSSTKKSSS
QKDVSVTVKKDVDKERERELEQERYRMNWLGKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042810XLOC_042810Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068636TCONS_00068636Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005120UPF3_dom
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 189..220
NoneNo IPR availableCOILSCoilCoilcoord: 144..164
NoneNo IPR availableGENE3D3.30.70.330coord: 28..118
e-value: 2.5E-14
score: 52.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..633
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 29..186
e-value: 7.3E-47
score: 159.5
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 30..115

Blast
[Close]
BLAST of TCONS_00068636-protein vs. Swiss-Prot (Human)
Match: REN3B (Regulator of nonsense transcripts 3B OS=Homo sapiens GN=UPF3B PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.788e-34
Identity = 77/162 (47.53%), Postives = 111/162 (68.52%), Query Frame = 0 
Query:   30 KLVIRRLPTSLNEETLKEELGNIPEYEYFYFTTGDTSFGMQPYSRAYISFKNYDDVYDFRNKFDGHLFYDTRGREFSAVVEFAPCQ-LVPKERQKKDHKTGTLEKDPEFIQFLESLDKEEEKLPSA-EIYIEEIEAAKAIDKNK---VKFTTPLIDYLKEKR 186
            K+VIRRLP +L +E L+E L  +PE++YF F + DTS     Y+RAYI+FKN +D+  FR++FDG++F D +G+E+ A+VEFAP Q    K+ +K+D K GT++ DPE+ +FLES   + EK+ S  E  +EEIEA     KN+    K TTPL+ +LK K+
Sbjct:   52 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTPETLLEEIEA-----KNRELIAKKTTPLLSFLKNKQ 208
The following BLAST results are available for this feature:
BLAST of TCONS_00068636-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REN3B3.788e-3447.53Regulator of nonsense transcripts 3B OS=Homo sapie... [more]
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