TCONS_00069006-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069006-protein
Unique Name	TCONS_00069006-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	558

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069006-protein ID=TCONS_00069006-protein|Name=TCONS_00069006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp
MADNLLSEMRKLFNMAQDGVVASKLCNMMEDIQKNNNEDAFYAGFINHLQ
KAMVFYNAATCVERVMEFAAAFTTFATIKKQKEAKEGDSMASELEDDVTE
VFLANILKFLVQNHNSRDKAVRYRCCQLINKILNCMGEDAMIDEDLSDSI
YECMMIRIKDRSPRIRIQAVLALVRLQDPEDEECPVIDAFLHSMRTDGNA
DVRRTIVANIALSRKTLPYVIGRTRDVKDSNRKSAFLTLAEKVSIRAFTI
AQRVKLLSVGLKDRSNAVKQACGQMVKAWLRSYNQDIFKLLEAIDLEESV
ECAENLIDYILKEALPEKLQEYIKLVKDLGEETNGPVKLVTFDKLTPEIS
YFWYMLCKHLIGMGENGELMLQQLLPELTNFCEYIKLYAERNFIDSAIIT
AFNGDESGTQEFILEYLLKIAGLLDFSDEVGRKNLKSLVHDLLVAETMPL
SLASVLVERYINAESDENKFVTDLVETIADIKQPLVQVVTTAMKENNRRN
ELKLARIRVAINECQEDLDNAVKSNDFHQAAVLKEQMTSHEKEKESLLDE
MNMGKINE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042996	XLOC_042996	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069006	TCONS_00069006	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 530..550
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 535..558
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 25..527 e-value: 1.8E-18 score: 65.9
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 371..448 coord: 92..322

Blast

[Close]

BLAST of TCONS_00069006-protein vs. Swiss-Prot (Human)
Match: CND3 (Condensin complex subunit 3 OS=Homo sapiens GN=NCAPG PE=1 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 2.383e-109
Identity = 213/558 (38.17%), Postives = 328/558 (58.78%), Query Frame = 0

Query:   14 NMAQDGVVASKLCNMMEDIQKNNNEDAFYAGFINHLQKAMVFYNAATCVERVMEFAAAFTTF---ATIKKQKEAKEGDSMASELEDDVTEVFLANILKFLVQNHNSRDKAVRYRCCQLINKILNCMGEDAMIDEDLSDSIYECMMIRIKDRSPRIRIQAVLALVRLQDPEDEECPVIDAFLHSMRTDGNADVRRTIVANIALSRKTLPYVIGRTRDVKDSNRKSAFLTLAEKVSIRAFTIAQRVKLLSVGLKDRSNAVKQACGQ-MVKAWLRSYNQDIFKLLEAIDLEESVECAENLIDYILKEALPEKLQEYIKLVKDLGEETNGPVKLVTFDKLTPEISYFWYMLCKHLIGMGENGELMLQQLLPELTNFCEYIKLYAERNFIDSAIITAFNGDESG---------TQEFILEYLLKIAGLLDFSDEVGRKNLKSLVHDLLVAETMPLSLASVLVERYINAESDENKFVTDLVETIADIKQPLVQVVTTAMKENNRRNELKLARIRVAINECQEDLDNAVKSNDFHQAAVLKEQMTSHEKEKESLLDEMNMGKINE 558
            N A+  V  S+    M+D      +  F+  FI++L+  MV Y     VERV+EFAA F T    + ++  +E ++G               L  +  FL+++H +   AVR+R C LINK+L  M E+A ID+D+ D I + M+IR+KD+ P +RIQAVLAL RLQDP+D+ECPV++A+   +  D N +VRR +++ IA S KTLP ++GRT+DVK++ RK A+  LAEKV +RA +IAQRV LL  GL DRS+AVKQA  + +++ WLR    +I +LL  +D+E S E A ++++ +        L E + L K+     N   KL+  + LTPEI+ +W  LC++L   G+ GE  L+Q+LPE   + +Y+  Y +        I   N +  G         T+EFI + L+ I   LD S+E GRK L +++ ++L+  T+P+SL S LVER ++   D+NK    + E I++I+ P+V V       + R+ ELK+A I+V + E +E L+N +   DF++A+ LKE++ + E  + +LL E    +I E
Sbjct:   23 NQAKLVVALSRTYRTMDD------KTVFHEEFIHYLKYVMVVYKREPAVERVIEFAAKFVTSFHQSDMEDDEEEEDGG-------------LLNYLFTFLLKSHEANSNAVRFRVCLLINKLLGSMPENAQIDDDVFDKINKAMLIRLKDKIPNVRIQAVLALSRLQDPKDDECPVVNAYATLIENDSNPEVRRAVLSCIAPSAKTLPKIVGRTKDVKEAVRKLAYQVLAEKVHMRAMSIAQRVMLLQQGLNDRSDAVKQAMQKHLLQGWLRFSEGNILELLHRLDVENSSEVAVSVLNALFSIT---PLSELVGLCKN-----NDGRKLIPVETLTPEIALYWCALCEYLKSKGDEGEEFLEQILPEPVVYADYLLSYIQS-------IPVVNEEHRGDFSYIGNLMTKEFIGQQLILIIKSLDTSEEGGRKKLLAVLQEILILPTIPISLVSFLVERLLHIIIDDNKRTQIVTEIISEIRAPIVTVGVNNDPADVRKKELKMAEIKVKLIEAKEALENCITLQDFNRASELKEEIKALEDARINLLKETEQLEIKE 546

The following BLAST results are available for this feature:

BLAST of TCONS_00069006-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069006-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CND3	2.383e-109	38.17	Condensin complex subunit 3 OS=Homo sapiens GN=NCA...	[more]

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TCONS_00069006-protein (polypeptide) - C. hemisphaerica