TCONS_00069317-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069317-protein
Unique NameTCONS_00069317-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length197

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069317-protein ID=TCONS_00069317-protein|Name=TCONS_00069317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MISLIYSFFQGARSYSRNKCNKAILLSQNSYNGFDFSGTLFIDTLSDDDF
VDLAFSYQNNRNFYLFSWKQKQQAYWRSKPSFLSRARAGIELKHIHSTIG
PSFDLRAAIWHTGNFTSQSTLLWRDEKNRGWQDKTSYFWQLLHRPMYGLI
RLKVYKDLELMVDTGFLQNETLKGGKFGPYAFSQARMIWSNMKIECN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043195XLOC_043195Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069317TCONS_00069317Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008859Thrombospondin_C
IPR013320ConA-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0005576 extracellular region
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.200coord: 6..197
e-value: 3.8E-51
score: 173.4
IPR008859Thrombospondin, C-terminalPFAMPF05735TSP_Ccoord: 18..197
e-value: 2.3E-62
score: 210.4
IPR008859Thrombospondin, C-terminalPROSITEPS51236TSP_CTERcoord: 1..197
score: 60.38
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 16..197

Blast
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BLAST of TCONS_00069317-protein vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.770e-56
Identity = 80/188 (42.55%), Postives = 121/188 (64.36%), Query Frame = 0 
Query:   10 QGARSYSRNKCNKAILLSQNSYNGFDFSGTLFIDTLSDDDFVDLAFSYQNNRNFYLFSWKQKQQAYWRSKPSFLSRARAGIELKHIHSTIGPSFDLRAAIWHTGNFTSQSTLLWRDEKNRGWQDKTSYFWQLLHRPMYGLIRLKVYKDLELMVDTGFLQNETLKGGKFGPYAFSQARMIWSNMKIECN 197
            QG         +  + +   ++NG DF GT  ++T++DDD+    FSYQ++  FY+  WKQ +Q YW++ P F + A+ G++LK + S  GP   LR A+WHTG+   Q  LLW D +N GW+DKTSY WQLLHRP  G IR+K+Y+  +L+ D+G + + +++GG+ G + FSQ  +IWSN++  CN
Sbjct:  751 QGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFLFSYQDSGRFYVVMWKQTEQTYWQATP-FRAVAQPGLQLKAVTSVSGPGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWQLLHRPQVGYIRVKLYEGPQLVADSGVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCN 937
The following BLAST results are available for this feature:
BLAST of TCONS_00069317-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP33.770e-5642.55Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=... [more]
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