TCONS_00069457-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069457-protein
Unique NameTCONS_00069457-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1457

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069457-protein ID=TCONS_00069457-protein|Name=TCONS_00069457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1457bp
PIDRASKTNNPNTVLQRASDTFVEIPLNNTGDVQPAASSAAVFTINRNND
EQTNDLHIDNQSKCEALETIARTVRKKIHVNFYRLGCQIQKHFLGVALFS
FVILAVCIVVPLNKYGLTVETDIQNIWVASSGRLSEEVAYSEKTTGRKGF
QNEAEFGYEVLMQTAKDESQNMLTSAALQDHLEMVKKVKDIKSKTFGVNW
TLRHICDRYRPPDFGVAHEWNQAIDNMVPCLVMTPLDCFWEGSIIASYGP
HYTENLHMHLKSFHNRTLREGYKYHNPQDLVNYLGNSSSDQYMYKRVKRF
VDKVGLGAGYMDRPCFATHKCPSSSNVSKDIAGEFQNGCYGVARKYMYWP
KDVIVSKMFLDENGFTSAHALQTVFKIQSPKTFLLDKEMSRVFASRQFGL
KEATKVIDDWKLQFTKMVKEENEKRKSNSSNMLAFSTTSFKDLVKEFSNT
PRKSSTYVGLILLTVYSIFTLKRWSSTIYSYGGLGLIGVVCAVASVFAGL
CLASFSRMSLNTISVQVLPFLALGLGLDNIYLMARTYVFVCDRREFKCKE
IVGMCLGEVGLDITLASFANXTYVFVCDRREFKCKEIVGMCLGEVGLDIT
LASFANTCSFLLASFVPIGAVQTFAKQAAIIYGVNWFTVIFAFSSILSFD
VVRQRHKHMDLLFCFKECADDDDDDDDEEEERRARQVSEYVQSNISMSFP
GATPDLPPLNAQSRVRVTTPSVIRRGGDEPPPPRFHLSRASAAQRNSHRS
FNVTRQDRERLRRNRRRKRRERTTRQTTCKDFFFKLSLTYFAQHYYGPFL
VKTSTKIISMLVCLALLIISLVGVMQVEKGLDLSDMVPKQTTEYQYFSER
QKYFSYYKVFVVIANNTDGTRFDYANNQQLVYDLHRKLYNVGKMVKTPNR
FWLDVFSSWLREWQTELREQWKEKTKNGTLDKTCLPYCQNTMLEVQRIFE
LLTTPLRVSRPTNPIGCTLAKAPTSKESKKNIVHRSLVNEQNIINPDLFY
LALSLWHTEDSLGLWESEVEMLPRPPITHINHHRCHFFPEILEAAPEYST
ISFEVHNIQTNEDYVQLIKDVRKICDEFKKKGLNSYPTGIPFTYWEQFVS
LDDHLIVAITVLLSSIFLVALFCSMNLQAALFIVSFLGINLFETVGFIGL
CGIKLSAISIIPLMMSVGAGTQFIVHSVMAFLNTEGTRDKRVRGSLEIMF
ASVFDCCLSSVIMIAMLASSKYDFIVRYFFQLMLWIILISMLNTLVFLPV
MLSIGGPEKIQGRNAIAPVQTPTYFKTFPGNLTEWNTFNPYRRNTLSTVP
EESSYLNSRSGTPANRGAAASISGGNVRRGTSSSMSLDEVDEVDIAETSF
EDYLHPPSSSSRRPTPSPAWSHTPHACTARNERLHHATNYRNLPAKGRRA
RERAPSSNKWQHGERGAEAPKQTYVEIDDNEHRVTTKIKTTIAMEFEYSH
PFSVPEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043289XLOC_043289Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069457TCONS_00069457Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp
IPR000731SSD
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 751..771
NoneNo IPR availableGENE3D1.20.1640.10coord: 401..660
e-value: 7.7E-22
score: 77.0
coord: 1053..1267
e-value: 2.3E-20
score: 72.2
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 1062..1254
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 582..648
coord: 456..544
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 120..927
e-value: 2.9E-33
score: 114.9
coord: 1054..1254
e-value: 1.3E-19
score: 69.8
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 452..649
score: 22.67

Blast
BLAST of TCONS_00069457-protein vs. Swiss-Prot (Human)
Match: PTC2 (Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2)

HSP 1 Score: 496.123 bits (1276), Expect = 5.957e-153
Identity = 340/1194 (28.48%), Postives = 564/1194 (47.24%), Query Frame = 0
Query:   74 VRKKIHVNFYRLGCQIQKH-----FLGVALFSFVILAVCIVVPLNKYGLTVETDIQNIWVASSGRLSEEVAYSEKTTGRKGFQNEAEFGYEVLMQTAKDESQNMLTSAALQDHLEMVKKVKDIKSKTFGVNWTLRHICDRYRPPDFGVAHEWNQAIDNMV----PCLVMTPLDCFWEGSIIASYGPHYTENLHMHLKSFHNRTLREGYKYHN--PQDLVNYLGNSSSDQYMYKRVKRFVDKVGLGAGYMDRPCFATH--KCPSS-----SNVSKDIAGEFQNGCYGVARKYMYWPKDVIVSKMFLDENG-FTSAHALQTVFKIQSPKTFLLDKEMSRVFASRQFGLKE--ATKVIDDWKLQFTKMVKEENEKRKSNSSNMLAFSTTSFKDLVKEFSNTPRKSSTYVGLILLTVYSIFTLKRWSSTIYSYGGLGLIGVVCAVASVFAGLCLASFSRMSLNTISVQVLPFLALGLGLDNIYLMARTYVFVCDRREFKCKEIVGMCLGEVGLDITLASFANXTYVFVCDRREFKCKEIVGMCLGEVGLDITLASFANTCSFLLASFVPIGAVQTFAKQAAIIYGVNWFTVIFAFSSILSFDVVRQRHKHMDLLFCFKE-CADDDDDDDDEEEERRARQVSEYVQSNISMSFPGATPDLPPLNAQSRVRVTTPSVIRRGGDEPPPPRFHLSRASAAQRNSHRSFNVTRQDRERLRRNRRRKRRERTTRQTTCKDF-FFKLSLTYFAQHYYGPFLVKTSTKIISMLVCLALLIISLVGVMQVEKGLDLSDMVPKQTTEYQYFSERQKYFSYYKVFVVIANNTDGTRFDYANNQQLVYDLHRKLYNVGKMVKTPN----RFWLDVFSSWLREWQTELREQW------KEKTKNGTLDKTCLPYCQNTMLEVQRIFELLTTPLRVSRPTNPIGCTLAKAPTSKESKKNIVHRSLVNEQNIINPDLFYLALSLWHTEDSLGLWESEVEMLPRPPITHINHHRCHFFPEILEAAP----EYSTISFEVHNIQTNEDYVQLIKDVRKICDEFKKKGLNSYPTGIPFTYWEQFVSLDDHLIVAITVLLSSIFLVALFCSMNLQAALFIVSFLGINLFETVGFIGLCGIKLSAISIIPLMMSVGAGTQFIVHSVMAFLNTEGTRDKRVRGSLEIMFASVFDCCLSSVIMIAMLASSKYDFIVRYFF 1230
            +R       + LGC IQ+H     FLG+  F  + L + + +        +ET+++ +WV    R+S+E+ Y+++  G      EA +  ++L+QTA+ E +N+LT  AL  HL+       ++   +G +W L  IC +      GV    N  I+ M+    PC+++TPLDCFWEG+ +   G  Y                R   ++ N  P+ L+  LG  +S     +  +  +DK  +G  Y+ RPC       CP S     S  + ++A E   GC+G + K+M+W +++++  M  D  G    A ALQ+ F + SP+   L +     + +   G  E  A+ V+  W+ +F ++ +E   +  S   +  AFS+T+  D++  FS     +    G +L+  Y+  T+ RW     S G +GL GV+    +V +GL L +   ++ N  + QVLPFLALG+G+D+++L+A  +           + + G  L                            +E +G CL   G  + L S  N  +FL+A+ VPI A++ F+ QAAI+ G  +  V+  F +ILS D+ R+  + +D+L CF   C+        +E       V     +    +F           A S+  VT             PP+ HL    +    S   F+     R+ L       + E T ++  CK     + +L +FA++ + P L+++  K I +++  ALL +SL G   V+ GL L+D+VP+ T E+ + S + +YFS Y+V +V         FDYA++Q+ ++DLH++  ++  ++  P     R WL  + +WL+  Q    + W      +   +NG+ D                 ++LL        P +                  +  R LV+ + +I P+LFY+ L++W + D LGL  S+    P PP     H +     E L   P    E++   F +  +Q   D+V+ I+  R  C E  + G+++YP+G PF +WEQ++ L    ++A+ +LL   FLV     +N   A  IV  L +   E  G +G  GIKLSAI ++ L+ SVG G +F VH  + FL T+G+R+ R   +LE  FA V D  +S+++ + MLA S +DFIVRYFF
Sbjct:   36 LRAYFQGLLFSLGCGIQRHCGKVLFLGLLAFGALALGLRMAI--------IETNLEQLWVEVGSRVSQELHYTKEKLG-----EEAAYTSQMLIQTARQEGENILTPEALGLHLQAALTASKVQVSLYGKSWDLNKICYKS-----GVPLIENGMIERMIEKLFPCVILTPLDCFWEGAKLQG-GSAYLPG-------------RPDIQWTNLDPEQLLEELGPFAS----LEGFRELLDKAQVGQAYVGRPCLHPDDLHCPPSAPNHHSRQAPNVAHELSGGCHGFSHKFMHWQEELLLGGMARDPQGELLRAEALQSTFLLMSPRQ--LYEHFRGDYQTHDIGWSEEQASTVLQAWQRRFVQLAQEALPENASQQIH--AFSSTTLDDILHAFSEV-SAARVVGGYLLMLAYACVTMLRWDCA-QSQGSVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDVFLLAHAFT----------EALPGTPL----------------------------QERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALRAFSLQAAIVVGCTFVAVMLVFPAILSLDLRRRHCQRLDVLCCFSSPCSAQVIQILPQELGDGTVPVGIAHLTATVQAFTHC-------EASSQHVVTIL-----------PPQAHLVPPPSDPLGSEL-FSPGGSTRDLL------GQEEETRQKAACKSLPCARWNLAHFARYQFAPLLLQSHAKAIVLVLFGALLGLSLYGATLVQDGLALTDVVPRGTKEHAFLSAQLRYFSLYEVALVTQGG-----FDYAHSQRALFDLHQRFSSLKAVLPPPATQAPRTWLHYYRNWLQGIQAAFDQDWASGRITRHSYRNGSEDGAL-------------AYKLLIQTGDAQEPLD---------------FSQLTTRKLVDREGLIPPELFYMGLTVWVSSDPLGLAASQANFYPPPP--EWLHDKYDTTGENLRIPPAQPLEFAQFPFLLRGLQKTADFVEAIEGARAACAEAGQAGVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCTFLVCALLLLNPWTAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVHVALGFLTTQGSRNLRAAHALEHTFAPVTDGAISTLLGLLMLAGSHFDFIVRYFF 1089          
The following BLAST results are available for this feature:
BLAST of TCONS_00069457-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTC25.957e-15328.48Protein patched homolog 2 OS=Homo sapiens GN=PTCH2... [more]
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