TCONS_00069705-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069705-protein
Unique Name	TCONS_00069705-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	761

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069705-protein ID=TCONS_00069705-protein|Name=TCONS_00069705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=761bp
MILGGSKSKVDIRTKSKVDFRLKRVDIIAQGSISQIKFTYDDESIWCYGP
DRGTKSNRPIILHEGEYLVRVSHERLYDYACAGALVEFETNKGRVFHYTP
GNSWRGYATGWESETTTVKVENGMEIISLVIKRGILIGIEQQPIAEENKG
QTKQKEWYVSCYSAGKEDIDLNHNSSKEKNEEVVFKYFNTKKEALKHWND
LQALVAKKKERGAMLVDCLSAKVLKSTGSDDIVERCKKESIEKGFCAEDQ
HDESIFQVIWLMYRSIMTTRDIVIFLLTILLKSIADLLSVHLQFVKGSIL
ALLVSTFDSETLDKNSYVRFTCNYFYTCDTDKPLSIGRALLISGCIIKLV
STAVNMIDIYIEQNLNSGRKLEMRRSILKHAIRLDQAFYDVNSSGHINES
MQVNSIHRLATGQIPRVIQTIISIFLNLYYIIKIDFYLGAFTMFVTTFNT
TVFVKRFHNMLKKSWKYELKWDMALRDVKSKLTGNRVLVKMFANEDKYFR
EYDQIYDECMTSFQSKSITYCLYIAAQQLTGFVTFAVSIYIFLDHLTETK
LTTAEITSFFFLLQTFSGNVRSFFWQDENIKENVRHLDKFIRLKNQVPGM
VDGDEVIEDLKGEIIFEDVDFSYPSRPLEPVLKKFNLKIQPNKMTAIVGD
SGAGKSTIAKLIMRVYDPDSGRITVDGHDMKSLNIPKLHKEMGIVSQSPG
LITGTLEENIAYGSIKDVCSREDVERAARLTKCDFIDKFRSGYDTYAGGS
GMQLSGGQXHD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043406	XLOC_043406	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069705	TCONS_00069705	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011527	ABC1_TM_dom
IPR003439	ABC_transporter-like
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0042626	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	ATPase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.300		coord: 600..760 e-value: 5.0E-35 score: 120.6
None	No IPR available	GENE3D	1.20.1560.10		coord: 250..598 e-value: 2.8E-22 score: 78.6
None	No IPR available	GENE3D	2.100.10.30		coord: 4..139 e-value: 2.1E-6 score: 27.3
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 276..568 e-value: 3.7E-13 score: 49.7
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 372..576 score: 14.987
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 275..593
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 632..759 e-value: 1.0E-20 score: 74.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 606..759

Blast

[Close]

BLAST of TCONS_00069705-protein vs. Swiss-Prot (Human)
Match: ABCBA (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.929e-38
Identity = 114/426 (26.76%), Postives = 202/426 (47.42%), Query Frame = 0

Query:  349 LVSTAVNMIDIYIEQNLNSGRKL--EMRRSILKHAIRLDQAFYDVNSSGHINESMQVNS--IHRLATGQIPRVIQTIISIFLNLYYIIKIDFYLGAFTMFVTTFNTTVFV--KRFHNMLKKSWKYELKWDMALRDVKSKLTGNRVLVKMFANEDKYFREYDQIYDECMTSFQSKSITYCLYIAAQQLTGFVTFAVSIYIFLDHLTETKLTTAEITSFF---FLLQTFSGNVRSFFWQDENIKENVRHLDKFIRLKNQVPGMVDGDEVI---EDLKGEIIFEDVDFSYPSRPLEPVLKKFNLKIQPNKMTAIVGDSGAGKSTIAKLIMRVYDPDSGRITVDGHDMKSLNIPKLHKEMGIVSQSPGLITGTLEENIAYGS-IKDVCSREDVERAARLTKC-DFIDKFRSGYDTYAGGSGMQLSGGQXH 760
            L   A N I +Y+ Q   SG+++   +R S+    +R + AF+D   +G +   +  ++  + R  T  +   ++      + +  +  +   L  F + V    + + V   R+   L K  +  L     L + +    GN   V+ F  E     +Y    D  M   + ++     +  A  L+G +     +Y     +    +T  E++SF    F +    G + SF+     + + +    +   L  + P +   + VI   +  +G + F++V F+YP+RP  P+ + F+L I    +TA+VG SG+GKST+  L++R+YDP SG I++DGHD++ LN   L  ++G VSQ P L + ++ ENIAYG+      + E+++R A +     FI  F  G++T  G  G+ LSGGQ  
Sbjct:  223 LCGAAANAIRVYLMQT--SGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER---IGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFY---SELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQ 640

The following BLAST results are available for this feature:

BLAST of TCONS_00069705-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069705-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCBA	1.929e-38	26.76	ATP-binding cassette sub-family B member 10, mitoc...	[more]

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TCONS_00069705-protein (polypeptide) - C. hemisphaerica