TCONS_00070160-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070160-protein
Unique Name	TCONS_00070160-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	515

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070160-protein ID=TCONS_00070160-protein|Name=TCONS_00070160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
NTKISNVNETMKDELNPIFCTGRGPDKENIDNININDVLGGYSLTLIDSL
DTLAVIGNHSEFKNAVSRVISNVNFNTDNTIQIFEAAIRVLGGLLSAHLL
IVSPSKEFQSLRPQDYGDELLNMAHDLANRLLVAFEGTQTGIPWPRVNLI
SGVPPNCATSTCTAGAGTLVLEFGILGRLLDDPTIEYQARKVVDELWSYQ
SKSTGLFGNVIDIHSGEWIGKMSGLGAGIDSFYEYLLKSYILFGQKEDLH
RFNKIYDRIKRHMRKGRRKCNNGTGEVPLYVNVHMDSGEIMNTWIDALQS
VFTGVQVLHGDIEEAICSHAIYYAIWRKYGALPERFNWKLKAPDVKFYPL
RPEFSESTYLLYQATKHPFYLHVGTEIVESLNKYTKVKCGYATLHDVEDK
STEDRMESFFLSETIKYLYLLFDVDNPINKDASQWIFSTEGHIFKLDQKY
RGKYDFEFFDYPEEERANDDDVLNVHQSANQTETTSCDNYKIDKSSRMPL
FDRYYTQIKDFVGIY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043694	XLOC_043694	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070160	TCONS_00070160	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001382	Glyco_hydro_47

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001382	Glycoside hydrolase family 47	PRINTS	PR00747	GLYHDRLASE47	coord: 43..57 score: 49.52 coord: 349..373 score: 44.95 coord: 134..153 score: 41.9 coord: 294..310 score: 27.73 coord: 80..98 score: 54.64 coord: 408..428 score: 62.59 coord: 226..243 score: 62.43
IPR001382	Glycoside hydrolase family 47	PFAM	PF01532	Glyco_hydro_47	coord: 11..445 e-value: 2.6E-108 score: 362.7
IPR001382	Glycoside hydrolase family 47	SUPERFAMILY	48225	Seven-hairpin glycosidases	coord: 11..451
None	No IPR available	GENE3D	1.50.10.10		coord: 10..457 e-value: 6.2E-135 score: 450.0

Blast

[Close]

BLAST of TCONS_00070160-protein vs. Swiss-Prot (Human)
Match: EDEM1 (ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Homo sapiens GN=EDEM1 PE=1 SV=1)

HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0
Identity = 306/508 (60.24%), Postives = 384/508 (75.59%), Query Frame = 0

Query:   12 KDELNPIFCTGRGPDKENIDNININDVLGGYSLTLIDSLDTLAVIGNHSEFKNAVSRVISNVNFNTDNTIQIFEAAIRVLGGLLSAHLLIVSPSKEFQSLRPQDYGDELLNMAHDLANRLLVAFEGTQTGIPWPRVNLISGVPPNCATSTCTAGAGTLVLEFGILGRLLDDPTIEYQARKVVDELWSYQSKSTGLFGNVIDIHSGEWIGKMSGLGAGIDSFYEYLLKSYILFGQKEDLHRFNKIYDRIKRHMRKGRRKCNNGTGEVPLYVNVHMDSGEIMNTWIDALQSVFTGVQVLHGDIEEAICSHAIYYAIWRKYGALPERFNWKLKAPDVKFYPLRPEFSESTYLLYQATKHPFYLHVGTEIVESLNKYTKVKCGYATLHDVEDKSTEDRMESFFLSETIKYLYLLFDVDNPINKDASQWIFSTEGHIFKLDQKYRGKYDFEFFDYPEEERANDDDVLNVHQSANQ-----TETTSCDNYKIDKSSRMPLFDRYYTQIKDFVGI 514
            +DELNPI C GRGPD+ +  N+NINDVLG YSLTL+D+LDTLA++GN SEF+ AV  VI+ V+F+ D+T+Q+FEA IRVLG LLSAH +I    + F  +  +DY +ELL MAHDLA RLL AFE T+TGIP+PRVNL +GVPP+    TCTAGAG+L++EFGIL RLL D T E+ AR+ V  LW+ +S  TGL GNV++I +G W+GK SGLGAG+DSFYEYLLKSYILFG+KEDL  FN  Y  I+ ++R+GR  CN G G+ PLYVNV+M SG++MNTWID+LQ+ F G+QVL GD+E+AIC HA YYAIW++YGALPER+NW+L+APDV FYPLRPE  ESTYLLYQATK+PFYLHVG +I++SL KYTKVKCGYATLH V DKSTEDRMESFFLSET KYLYLLFD DNP++K  ++++F+TEGHI  +D+  R     EFF    EE   D    +VH+           +++C+    ++   +PL   Y  QI   VG+
Sbjct:  152 QDELNPIHCRGRGPDRGDPSNLNINDVLGNYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDSKQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNNETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIVSVDEHLRELPWKEFF---SEEGGQDQGGKSVHRPKPHELKVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVGL 656

The following BLAST results are available for this feature:

BLAST of TCONS_00070160-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070160-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EDEM1	0.000e+0	60.24	ER degradation-enhancing alpha-mannosidase-like pr...	[more]

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TCONS_00070160-protein (polypeptide) - C. hemisphaerica