TCONS_00070189-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070189-protein
Unique Name	TCONS_00070189-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	469

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070189-protein ID=TCONS_00070189-protein|Name=TCONS_00070189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
VSDEVLSKLNNERPVYTPSNFKTLKRLKSKKTIDVSRRDSAPSVVITTSS
QVDSDSAQKQQKRQIXKLALREPNMTLEFLDECISCFAKSNDESRNLCLN
YMAPWFPNLARYCGLTRNDPNKLQMMEIVKKLIDLTISNRQNYPFIQASV
WANIGKIPDLLDVVLDLFMKTSTAGGFNSEKAEVLADTSVTLASANVAHV
SKKILDKFHTVIDRTRISHVESLERHLMWDDIAILARYLLMLSFNDSLDV
LQHLPDIFHIVTLLVSSGPVSLRASIHGLVINSLQSLLTCEMKLSDKTQL
LIRKKLEDLSLQKFYLLFGISNVKSTPVKAFVTQTKVNRTFYSKLKSREA
DTEISLSSLEVIAETLLSIVEACCKDLKNDNWIDRWTALCSSHCYDYNPA
IQPRCNVVLGVISKESKEDDINRALDVLTKATGVYQDFNLAEATLMCLAK
YQALLKKDSSFHKIYIANS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043716	XLOC_043716	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070189	TCONS_00070189	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 43..463 e-value: 5.9E-4 score: 18.2

Blast

[Close]

BLAST of TCONS_00070189-protein vs. Swiss-Prot (Human)
Match: NF1 (Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 2.245e-122
Identity = 203/404 (50.25%), Postives = 271/404 (67.08%), Query Frame = 0

Query:   68 LALREPNMTLEFLDECISCFAKSNDESRNLCLNYMAPWFPNLARYCGLTRNDPNKLQMMEIVKKLIDLTISNRQNYPFIQASVWANIGKIPDLLDVVLDLFMKTSTAGGFNSEKAEVLADTSVTLASANVAHVSKKILDKFHTVIDRTRISHVESLERHLMWDDIAILARYLLMLSFNDSLDVLQHLPDIFHIVTLLVSSGPVSLRASIHGLVINSLQSLLTC-EMKLSDKTQLLIRKKLEDLSLQKFYLLFGISNVKSTPVKAFVTQTKVNRTFYSKLKSREADTEISLSSLEVIAETLLSIVEACCKDLKNDNWIDRWTALCSSHCYDYNPAIQPRCNVVLGVISKESKEDDINRALDVLTKA-------TGVYQDFNLAEATLMCLAKYQALLKKDSSFHK 463
            LA  EP++TLEFL+ECIS F+KS+ E ++LCL YM PW  NL R+C    +D  + ++  I+ KLI +TI+ +Q YP IQA +W ++G+I DLLDVVLD F+KTS  GG  S KAEV+ADT+V LAS NV  VS K++ +   +ID+T +S   +LE+HLMWDDIAILARY+LMLSFN+SLDV  HLP +FH+VT LV++GP+SLRAS HGLVIN + SL TC ++  S++T+ ++R  L + SL KFYLLFGIS VKS  V AF +  + +R+F      RE     +L+SLE + E LL I+EAC +D+    W+D+WT L     + YNP++QPR  VV G ISK      I + + +L+KA          Y    L EAT++ L K Q LL KDS  HK
Sbjct: 1915 LAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNLVRFCK-HNDDAKRQRVTAILDKLITMTINEKQMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLVSSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLSLRASTHGLVINIIHSLCTCSQLHFSEETKQVLRLSLTEFSLPKFYLLFGISKVKSAAVIAFRSSYR-DRSFSPGSYERET---FALTSLETVTEALLEIMEACMRDIPTCKWLDQWTELAQRFAFQYNPSLQPRALVVFGCISKRVSHGQIKQIIRILSKALESCLKGPDTYNSQVLIEATVIALTKLQPLLNKDSPLHK 2313

The following BLAST results are available for this feature:

BLAST of TCONS_00070189-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070189-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NF1	2.245e-122	50.25	Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2	[more]

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TCONS_00070189-protein (polypeptide) - C. hemisphaerica