NK2d homeodomain transcription factor protein (polypeptide) - C. hemisphaerica

Overview
NameNK2d homeodomain transcription factor protein
Unique NameTCONS_00070249-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070249-protein ID=TCONS_00070249-protein|Name=NK2d homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MMSFLIENLLKDKSSERKDHDKSRDQLTPPATPTKDDSSRPKLEDLSDIE
LSSVDEDDLQDSYSKKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKK
INLTPTQIKIWFQNHRYKMKKYMKDMIQQAEYEWQKQKNDRYNPMHSPHR
KLSASSPPYHNPHRSSYYSRPSYLSTPPSFHRPRPYPPRSSISDYTPSSS
ISSYPSTPSTPQESPRKSPYWSSSNSCPPSLSLSTSTDKLVFNFKKDDLY
KHSPTNSLRSSGHSSFGPHEHLKKKWCSCCPPNIERP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043740XLOC_043740Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070249TCONS_00070249Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 64..126
e-value: 3.5E-23
score: 93.0
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 65..121
e-value: 1.2E-19
score: 69.7
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 62..122
score: 19.159
NoneNo IPR availableGENE3D1.10.10.60coord: 48..123
e-value: 6.4E-23
score: 80.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..272
NoneNo IPR availableCDDcd00086homeodomaincoord: 65..121
e-value: 3.58893E-20
score: 80.7504
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 97..120
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 52..122

Blast
[Close]
BLAST of NK2d homeodomain transcription factor protein vs. Swiss-Prot (Human)
Match: NKX21 (Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.092e-23
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0 
Query:   65 KKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKKINLTPTQIKIWFQNHRYKMKKYMKD 125
            +KRR+LF++ Q +ELER F+QQ YLS+PERE LA  I+LTPTQ+KIWFQNHRYKMK+  KD
Sbjct:  162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 222
The following BLAST results are available for this feature:
BLAST of NK2d homeodomain transcription factor protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX211.092e-2368.85Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1... [more]
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