TCONS_00070254-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070254-protein
Unique NameTCONS_00070254-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070254-protein ID=TCONS_00070254-protein|Name=TCONS_00070254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MEQLTLRGTLKGHNGWVTQIATTPQDPNQILSASRDKTLILWELTRDDEM
NYGVPKRCLTGHNHFISDVVMSSDGQFALSGSWDKTLRLWDLNAGITTRQ
FVGHTKDVLSVAFSADNRQIVSGSRDNTIKLWNTLGQCKYTISDECHTEW
VSCVRFSPNTQNPIIVSCGWDKAVKVWNLTNCKLKINHFGHTGYLNTVTV
SPDGSLCASGGKDGRAMLWDLNEGKHLYTLDGGNIINSLCFSPNRYWLCA
ATGPSIKIWDLESKSVVDELKPEVISVNNKSKQSAECISLAWSADGQTLF
AGYTDNLIRVWQVTRM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043742XLOC_043742Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070254TCONS_00070254Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 78..92
score: 42.24
coord: 207..221
score: 39.16
coord: 120..134
score: 42.16
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 181..220
e-value: 9.5E-7
score: 38.4
coord: 223..260
e-value: 0.091
score: 21.9
coord: 3..43
e-value: 2.0E-7
score: 40.7
coord: 52..91
e-value: 3.6E-7
score: 39.8
coord: 94..133
e-value: 1.8E-9
score: 47.5
coord: 271..312
e-value: 0.12
score: 21.5
coord: 135..178
e-value: 7.1E-8
score: 42.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 288..311
e-value: 0.0084
score: 16.8
coord: 188..220
e-value: 8.2E-5
score: 23.2
coord: 224..260
e-value: 4.5E-5
score: 24.0
coord: 8..42
e-value: 0.001
score: 19.7
coord: 98..133
e-value: 1.7E-8
score: 34.9
coord: 136..178
e-value: 1.7E-5
score: 25.4
coord: 55..91
e-value: 4.6E-8
score: 33.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 101..133
score: 15.822
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 188..229
score: 14.184
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 10..52
score: 12.046
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 59..100
score: 14.753
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 144..181
score: 10.676
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 280..316
score: 10.609
NoneNo IPR availableGENE3D1.10.10.670coord: 176..224
e-value: 1.1E-17
score: 63.2
coord: 40..88
e-value: 1.8E-14
score: 52.9
NoneNo IPR availableGENE3D2.40.50.140coord: 225..259
e-value: 7.2E-8
score: 31.4
coord: 1..39
e-value: 5.4E-8
score: 31.9
NoneNo IPR availableGENE3D2.140.10.10coord: 260..316
e-value: 3.2E-8
score: 32.2
NoneNo IPR availableGENE3D2.80.10.50coord: 89..153
e-value: 4.9E-21
score: 74.4
NoneNo IPR availableGENE3D2.80.10.50coord: 154..175
e-value: 5.0E-9
score: 35.8
NoneNo IPR availableCDDcd00200WD40coord: 6..312
e-value: 3.66515E-94
score: 282.687
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 165..179
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 207..221
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 30..44
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 120..134
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 78..92
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 10..316
score: 53.178
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 4..312

Blast
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BLAST of TCONS_00070254-protein vs. Swiss-Prot (Human)
Match: RACK1 (Receptor of activated protein C kinase 1 OS=Homo sapiens GN=RACK1 PE=1 SV=3)

HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 261/313 (83.39%), Postives = 286/313 (91.37%), Query Frame = 0 
Query:    2 EQLTLRGTLKGHNGWVTQIATTPQDPNQILSASRDKTLILWELTRDDEMNYGVPKRCLTGHNHFISDVVMSSDGQFALSGSWDKTLRLWDLNAGITTRQFVGHTKDVLSVAFSADNRQIVSGSRDNTIKLWNTLGQCKYTISDECHTEWVSCVRFSPNTQNPIIVSCGWDKAVKVWNLTNCKLKINHFGHTGYLNTVTVSPDGSLCASGGKDGRAMLWDLNEGKHLYTLDGGNIINSLCFSPNRYWLCAATGPSIKIWDLESKSVVDELKPEVISVNNKSKQSAECISLAWSADGQTLFAGYTDNLIRVWQVT 314
            EQ+TLRGTLKGHNGWVTQIATTPQ P+ ILSASRDKT+I+W+LTRD E NYG+P+R L GH+HF+SDVV+SSDGQFALSGSWD TLRLWDL  G TTR+FVGHTKDVLSVAFS+DNRQIVSGSRD TIKLWNTLG CKYT+ DE H+EWVSCVRFSPN+ NPIIVSCGWDK VKVWNL NCKLK NH GHTGYLNTVTVSPDGSLCASGGKDG+AMLWDLNEGKHLYTLDGG+IIN+LCFSPNRYWLCAATGPSIKIWDLE K +VDELK EVIS ++K+ +  +C SLAWSADGQTLFAGYTDNL+RVWQVT
Sbjct:    3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD-ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA-EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
The following BLAST results are available for this feature:
BLAST of TCONS_00070254-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RACK10.000e+083.39Receptor of activated protein C kinase 1 OS=Homo s... [more]
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