TCONS_00070480-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070480-protein
Unique Name	TCONS_00070480-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	377

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070480-protein ID=TCONS_00070480-protein|Name=TCONS_00070480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
GNDKLRTKVSTMHHFNNTTMAFPVWSDELDSLSISVAATNIFAGCFSLIG
NTLVIAVMLKRFRTASTFKKLLAHLAFCDIIYGISILLDTPNWLKKHWVY
TPMFCKVLPTTQFASSLAAEGTVVVIAIERYRGITQPLKVHWNNRDFSFS
LIIAWLFAFVSASPYFNVLNTVTIPYMGNHTFCIETWSTGDHIDQENSAF
IYSTYTFVGTFMLPMVILAVLYGRIIYIIRKPIDPIPCFEQLFIKRREKD
IRITKLLILVIVAFAICVLPNQIGHFIMSKATLSKSEKEILAYVLLIPYP
FQCVLNPLIYSIVDKKFRKDAKQILSCQGDKERKISRTMTSYFMVESASH
KKTSHSGETSICSMPLRTSREESESLF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043880	XLOC_043880	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070480	TCONS_00070480	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 35..59 score: 23.87 coord: 112..134 score: 24.05 coord: 253..277 score: 25.1 coord: 292..318 score: 26.55 coord: 203..226 score: 26.29 coord: 68..89 score: 19.97
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 50..310 e-value: 2.1E-31 score: 109.0
None	No IPR available	GENE3D	1.20.1070.10		coord: 2..366 e-value: 1.1E-55 score: 188.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 354..377
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 10..336
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 50..310 score: 31.946

Blast

[Close]

BLAST of TCONS_00070480-protein vs. Swiss-Prot (Human)
Match: QRFPR (Pyroglutamylated RFamide peptide receptor OS=Homo sapiens GN=QRFPR PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 6.549e-23
Identity = 79/316 (25.00%), Postives = 146/316 (46.20%), Query Frame = 0

Query:   24 VWSDELDSLS-ISVAATNIFAGCFSLIGNTLVIAVMLKRFRTASTFKKLLAHLAFCDI-IYGISILLDTPNWLKKHWVYTPMFCKVLPTTQFASSLAAEGTVVVIAIERYRGITQPLKVHW---NNRDFSFSLIIAWLFAFVSASPYFNVLN---TVTIPYMGNHTFCIETWSTGDHIDQENSAFIYSTYTFVGTFMLPMVILAVLYGRIIY--IIRKPIDPIPCFEQLFIKRREKDIRITK----LLILVIVAFAICVLPNQIGHFIMSKATLSKSE-----KEILAYVLLIPYPFQCVLNPLIYSIVDKKFRKD 320
            V++ EL   + +++  T +     +L GN LV  V+ +     +     +  LA  D+ I    I +     +  +W+     CK++P  Q  + +    T+  IA+ER++G+  P K+ W   N R F+  L + WL A +  SP ++V          Y   H  C+E W++  H        IY+T+  V  F+LP++++ +LY +I Y   I+K +        +  K   K  R  K    +++ V+  FA+C  P  + H ++  +   K       K I A V +I +    + NP++Y+ +++ F+K+
Sbjct:   35 VYTPELPGRAKLALVLTGVLIFALALFGNALVFYVVTRSKAMRTVTNIFICSLALSDLLITFFCIPVTMLQNISDNWLGGAFICKMVPFVQSTAVVTEILTMTCIAVERHQGLVHPFKMKWQYTNRRAFTM-LGVVWLVAVIVGSPMWHVQQLEIKYDFLYEKEHICCLEEWTSPVHQK------IYTTFILVILFLLPLMVMLILYSKIGYELWIKKRVGDGSVLRTIHGKEMSKIARKKKRAVIMMVTVVALFAVCWAPFHVVHMMIEYSNFEKEYDDVTIKMIFAIVQIIGFS-NSICNPIVYAFMNENFKKN 342

The following BLAST results are available for this feature:

BLAST of TCONS_00070480-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070480-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
QRFPR	6.549e-23	25.00	Pyroglutamylated RFamide peptide receptor OS=Homo ...	[more]

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TCONS_00070480-protein (polypeptide) - C. hemisphaerica