TCONS_00070525-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070525-protein
Unique NameTCONS_00070525-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length842

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070525-protein ID=TCONS_00070525-protein|Name=TCONS_00070525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=842bp
ACASHEMLNTVTTTITWTTLVDGNLKIITQAVITGPVTKAELYAYKKNGY
GEYILGNQTGKTITPLSLPVFAAEGKVGFELEGNVGVDGIKVFACDAPYY
EAAYGPWEKNCGNSTRKKWWNCMQSNDGQDPTQVHINNCYGRMPQEEIDK
GFTGMPCYNYTEWTSWGNCSEADGCGHEANVTRRRNCTIDGFIQPDEVCL
QLNYTWEINDTKACYNSFKPCYRWEDWGPWVTNGSACMIFEEYRHRLCFG
DTLSSTIITTERDNITGVDVEIVAIEPEWEDSNDISHCLEEELENPWPYA
ERNLTDPIMVHDKWVRVNVTVIPCLQWNETWISLGCNETCDNGTETFRRE
CIGMDLTPINASECEAAIDDPAHPHGEFKYQPCVGLPSCAEPMTQWTDWS
DCDRTCGTGNKIRTRECQGDPDDCKAYSKNEEETCNPTPCPKHSVWTEFD
EWSVCSGSCGNGTRMRKRQCSPPENDGTPCGYPVPSNYELIYEHIEVEDC
GHDRPGCPGFVQTSGNCKDGCEELGLECAILNKLNGSDIADAAGINCTIY
TDHEDDSEPAIGPNGECKGFNKVPVTNKCEAPANADHKRVCNCVPTGENT
FGGWSMFSPCTATCGTATKIRYRILVSEDFGIKEFDTQPCNLTNCPIDGQ
WSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDP
PICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCD
GSKWKYVPCQVEECAPVEVKGKFKIEDETFSADLDNLNSERSRALVERIS
DELNKMYKEFKHIQDDEQYLNVSLNKFTNGTGVVIQNQLKFP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043900XLOC_043900Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070525TCONS_00070525Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR000082SEA_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 601..646
e-value: 8.0E-6
score: 35.4
coord: 446..508
e-value: 1.4E-11
score: 54.4
coord: 651..704
e-value: 4.7E-9
score: 46.1
coord: 709..765
e-value: 0.045
score: 21.3
coord: 160..222
e-value: 2.2
score: 6.3
coord: 393..441
e-value: 3.4E-11
score: 53.2
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 395..440
e-value: 1.5E-6
score: 28.2
coord: 448..481
e-value: 1.6E-7
score: 31.4
coord: 603..645
e-value: 3.3E-5
score: 23.9
coord: 651..701
e-value: 8.8E-9
score: 35.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 647..703
e-value: 2.4E-13
score: 49.6
coord: 705..764
e-value: 1.5E-7
score: 31.1
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 385..441
e-value: 4.8E-8
score: 32.8
coord: 596..646
e-value: 3.8E-5
score: 23.5
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 443..508
score: 10.423
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 645..704
score: 12.457
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 706..765
score: 9.41
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 598..644
score: 8.028
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 390..441
score: 11.16
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 702..764
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 647..697
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 392..440
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 444..481
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 599..645
IPR000082SEA domainGENE3D3.30.70.960coord: 768..842
e-value: 3.8E-7
score: 29.7
IPR000082SEA domainPFAMPF01390SEAcoord: 769..841
e-value: 4.8E-6
score: 26.7
IPR000082SEA domainPROSITEPS50024SEAcoord: 765..842
score: 11.994
IPR000082SEA domainSUPERFAMILY82671SEA domaincoord: 770..841
NoneNo IPR availableGENE3D2.30.90.10coord: 157..214
e-value: 0.013
score: 15.5
coord: 445..517
e-value: 1.7E-8
score: 34.4

Blast
BLAST of TCONS_00070525-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.756e-25
Identity = 63/171 (36.84%), Postives = 86/171 (50.29%), Query Frame = 0
Query:  601 FGGWSMFSPCTATCGTATKIRYRIL---VSEDFGI----KEFDTQPCNLTNCPIDGQWSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDPPICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCDGSKWKYVPCQVEEC 764
            F  WS +  C+ TCG   + R R+    +  + G      + + + C    CP+DG WSEW  +  C  SCG G + RTR CNNP  Q+GGR C G  +E   C   P CPVHG W+ ++ +  CS  C  G    T+T  R C +P P  GG  CDG++ +   C    C
Sbjct: 4532 FSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRP-CPVHGAWSAWQPWGTCSESCGKG----TQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697          

HSP 2 Score: 106.301 bits (264), Expect = 3.461e-23
Identity = 70/195 (35.90%), Postives = 93/195 (47.69%), Query Frame = 0
Query:  584 NADHKRVCNCVPTGENTFGGWSMFSP---CTATCGTATKIRYRILVSE--DFGIK-----EFDTQPCNLTNCPIDGQWSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDPPICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCDGSKWKYVPCQVEECAPVE 768
            NA    +CN  P      G WS + P   C+ +CG  T+ R R+  +    FG       E   Q CN  NCPI G+W+ W  +  C+VSCG G + RTR C++P  QYGGR C G  ++   C   P CP HG W+ +  +  CS  C  G         R C +P P  GGR C G   +   C  + C PV+
Sbjct: 4628 NAVEIIMCNIRPC--PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDP-CPTHGNWSPWSGWGTCSRTCNGGQ----MRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC-PVD 4814          

HSP 3 Score: 102.449 bits (254), Expect = 5.991e-22
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 0
Query:  604 WSMFSPCTATCGTATKIRYRIL--VSEDFGIK-----EFDTQPCNLTNCPIDGQWSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDPPICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCDGSKWKYVPCQVEEC 764
            WS++  CT +CG   + R R     S   G +       +   CN+  CP+ G WS W  +G C+ SCG G + R R CNNP   +GG  C G   + Q C +   CP+HG W  +  +S CS  C  G    T    R C+DP P  GGR C+GS  +   C  + C
Sbjct: 4592 WSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERN-CPIHGKWATWASWSACSVSCGGGARQRT----RGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754          

HSP 4 Score: 87.8113 bits (216), Expect = 1.744e-17
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 0
Query:  647 IDGQWSEWPGYGRCNVSCGNGMKNRTRECNNPRKQYGGRDCMGVPIEFQRCGDPPICPVHGGWTQYEKFSDCSAPCRYGNDTVTETWVRHCTDPTPDLGGRNCDGSKWKYVPCQVEEC 764
            + G +S+W  +  C+V+CG G++ R+R CN P    GG+ C G  +E + C + P CPV G W+++  + +C+  C  GN T T T    C +P+   GGR C+G+  + + C +  C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKP-CPVDGSWSEWSLWEECTRSCGRGNQTRTRT----CNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640          
The following BLAST results are available for this feature:
BLAST of TCONS_00070525-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.756e-2536.84Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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