TCONS_00070555-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070555-protein
Unique NameTCONS_00070555-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length196

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070555-protein ID=TCONS_00070555-protein|Name=TCONS_00070555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MSTLSTNEVAAKKPAPEQTPAQTSNPKEPSTQPSTSSDAAGSSKSTGGEG
SGKKKLIKSTSSVSDLPMAGASMDNDSAVSEEQEVERRKLQMLVSAFSED
QLNRYEMYRRASFPKAAIKRLMQTITGGASVPPNVVIAMAGIAKVFVGEV
SEEALDVMESWGETGPIEPKHLREAARRLKQKQLLQATRYKGTVKF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043909XLOC_043909Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070555TCONS_00070555Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006809TAFII28
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006809TAFII28-like proteinPFAMPF04719TAFII28coord: 92..178
e-value: 3.4E-36
score: 123.2
IPR006809TAFII28-like proteinCDDcd08048TAF11coord: 97..180
e-value: 4.32706E-47
score: 150.409
NoneNo IPR availableGENE3D1.10.20.10coord: 97..185
e-value: 2.7E-36
score: 123.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..84
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 97..183

Blast
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BLAST of TCONS_00070555-protein vs. Swiss-Prot (Human)
Match: TAF11 (Transcription initiation factor TFIID subunit 11 OS=Homo sapiens GN=TAF11 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.920e-48
Identity = 74/113 (65.49%), Postives = 93/113 (82.30%), Query Frame = 0 
Query:   84 EVERRKLQMLVSAFSEDQLNRYEMYRRASFPKAAIKRLMQTITGGASVPPNVVIAMAGIAKVFVGEVSEEALDVMESWGETGPIEPKHLREAARRLKQKQLLQATRYKGTVKF 196
            E E +K+Q+LVS+FSE+QLNRYEMYRR++FPKAAIKRL+Q+ITG  SV  NVVIAM+GI+KVFVGEV EEALDV E WGE  P++PKH+REA RRLK K  +  +++K  + F
Sbjct:  100 EDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIFF 211
The following BLAST results are available for this feature:
BLAST of TCONS_00070555-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF111.920e-4865.49Transcription initiation factor TFIID subunit 11 O... [more]
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