TCONS_00070571-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070571-protein
Unique NameTCONS_00070571-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length186

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070571-protein ID=TCONS_00070571-protein|Name=TCONS_00070571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MSGRRGGGYSSEFEEPSSSSGSKRKSSSWRNDSISEKVKIARVDHGASRP
ARSSYIEEYEKEERKSHFAKFLSLNAYQRHQKLVGDYLRYYGGKPEHFKR
DSSKDKTDYDVLRENHKFIWDDEEETGDWGKQMAKRYYDKLFKEYCICDL
SCYKENKFAMRWRVEKEVTSGKGERFKGIDILIMLG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043915XLOC_043915Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070571TCONS_00070571Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019129Folate-sensitive_fs_Fra10Ac1
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019129Folate-sensitive fragile site protein Fra10Ac1PFAMPF09725Fra10Ac1coord: 107..175
e-value: 1.1E-28
score: 99.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Blast
[Close]
BLAST of TCONS_00070571-protein vs. Swiss-Prot (Human)
Match: F10C1 (Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 9.889e-48
Identity = 87/176 (49.43%), Postives = 115/176 (65.34%), Query Frame = 0 
Query:    7 GGYSSEF-EEPSSSSGSKRKSSSWRNDSISEKVKIARVDHG--ASRPARSSYIEEYEKEERKSHFAKFLSLNAYQRHQKLVGDYLRYYGGKPEHFKRDSSKDKTDYDVLRENHKFIWDDEEETG-DWGKQMAKRYYDKLFKEYCICDLSCYKENKFAMRWRVEKEVTSGKGERFKG 178
            GGY S+F ++      SKRK  +  +D + +K    +  HG  A +   +  ++  E   R+ H    ++++AYQRH K V DY+ YYGGK E FKR    DKTD DV+RENH+F+W++E+E    W K++AK+YYDKLFKEYCI DLS YKENKF  RWRVEKEV SGKG+ F G
Sbjct:    5 GGYDSDFSDDERCGESSKRKKRTVEDDLLLQKP-FQKEKHGKVAHKQVAAELLDREEARNRRFHL---IAMDAYQRHTKFVNDYILYYGGKKEDFKRLGENDKTDLDVIRENHRFLWNEEDEMDMTWEKRLAKKYYDKLFKEYCIADLSKYKENKFGFRWRVEKEVISGKGQFFCG 176
The following BLAST results are available for this feature:
BLAST of TCONS_00070571-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F10C19.889e-4849.43Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 ... [more]
back to top