TCONS_00070573-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070573-protein
Unique Name	TCONS_00070573-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	588

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070573-protein ID=TCONS_00070573-protein|Name=TCONS_00070573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
MRKSLATPQQGNGRRSMLGFGSAAAKGQRRVGLPEQKKLNFSANRSRMQN
SMVGSKRWSSQGSHAMKDQRPLSNRAFQKQLIDDILEFLSETGYPHSITP
KILSAPTTKEFVRVFEHLYGCIDNNFTMANKKVEEEVPKILKLLSYPFTI
SKSAMFAIGSLHSWPTLLGSLHWMVDLIKTFNSMDIEQVLFQPSFHDEDP
TRKHGKTFIEYYTLRYGKYMRNEDEEEDIKLMKKGLETAIIEDAGCSAED
HEMLREEVEALEQELAALEAESDPLEEAIKTKQILEEKIEQDEITIKELL
QEHVVQQKQASNYRRQLEEEDIDYEQLTERFDSIKHKSSEIKRELERLNN
ESDRLEQQNNEREIRYCRKYDEINSLINQYNDIVKELVQNSEIKQYIGNE
SLILVFDHNVQDISNTRYRLKSLLTKLAEQLSEDVRQLESEITNKEIEIT
KMKEAVADKKEEIPRLSNNIDRLDRLLDDKTSKLKHNTGTFGSIQQQEFA
LENQLQTIYQSVQNEIHCLEEKRLRVEEDGKKLKIEEDDFLQHILTYAKN
FQQYKLNVKKGIENLNKNLQSDIQHIDQIQKSYTESEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043916	XLOC_043916	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070573	TCONS_00070573	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005550	Kinetochore_Ndc80

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 244..365
None	No IPR available	COILS	Coil	Coil	coord: 562..582
None	No IPR available	COILS	Coil	Coil	coord: 502..529
None	No IPR available	COILS	Coil	Coil	coord: 370..390
None	No IPR available	COILS	Coil	Coil	coord: 421..476
None	No IPR available	GENE3D	1.20.1170.10		coord: 129..366 e-value: 1.3E-8 score: 33.6
None	No IPR available	GENE3D	1.20.5.730		coord: 422..532 e-value: 8.9E-5 score: 22.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
IPR005550	Kinetochore protein Ndc80	PFAM	PF03801	Ndc80_HEC	coord: 46..185 e-value: 6.8E-44 score: 149.1

Blast

[Close]

BLAST of TCONS_00070573-protein vs. Swiss-Prot (Human)
Match: NDC80 (Kinetochore protein NDC80 homolog OS=Homo sapiens GN=NDC80 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.495e-41
Identity = 143/524 (27.29%), Postives = 248/524 (47.33%), Query Frame = 0

Query:    1 MRKSLATPQQGNGRRSMLGFGSAAAKGQRRVGL--------PEQKKLNFSANRSRMQNSMVGSKRWSSQGSH-----------AMKDQRPLSNRAFQKQLIDDILEFLSETGYPHSITPKILSAPTTKEFVRVFEHLYGCIDNNFTMANKKVEEEVPKILKLLSYPFTISKSAMFAIGSLHSWPTLLGSLHWMVDLIKTFNSMDIEQVLF---QPSFHDEDPTRKHGKTFIEYYTLRYGKYMRNEDEEEDIKLMKKGLETAIIEDAGCSAEDHEMLREEVEALEQELAAL----EAESDPLEEAIKTKQILEEKIEQDEITIKELLQEHVVQQKQASNY-----RRQLEEEDIDYE--QLTERFDSIKHKSSEIKRELERLNNESDRLEQQNNE--------------REIRYCRKYDEINSLINQYNDIVKELVQNSEIKQYIGNESLILVFDHNVQDISNTRYR------LKSLLTKLAEQLSEDVRQ---LESEITNKEIEITKMKEAVADKKEEIPRLSN 468
            M++S +    G GR SM    S     Q   GL        P   KL+ +   S  + S+ G KR S  GS             +KD RPL+++AF +Q I  + EFL+E GY H+++ K L AP+ K+F+++F  LYG +  ++ + + K EEEVP+I K L YPF +SKS+M+ +G+ H+WP ++ +L W++D IK   +M     LF   QP   + +    H K F++Y    Y  +M   D  ++   M   L++ + +     A   E L  +  AL +++A L    E E + LE   K K  L+  +++ +  +  L     +  ++ +       R +LE E I  E  +L    D+ K+  ++I    ER+N+E + L+Q  N+               E++Y R  + I + + +Y+ + ++L    +  +        + F+         +YR      LK LL +  E++++ + +   LE  +      IT+ K +V   KEE+ +L +
Sbjct:    1 MKRS-SVSSGGAGRLSMQELRSQDVNKQ---GLYTPQTKEKPTFGKLSINKPTSERKVSLFG-KRTSGHGSRNSQLGIFSSSEKIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDE---MNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADI----ERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDD 512

The following BLAST results are available for this feature:

BLAST of TCONS_00070573-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070573-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NDC80	5.495e-41	27.29	Kinetochore protein NDC80 homolog OS=Homo sapiens ...	[more]

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TCONS_00070573-protein (polypeptide) - C. hemisphaerica