TCONS_00070640-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070640-protein
Unique NameTCONS_00070640-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length957

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070640-protein ID=TCONS_00070640-protein|Name=TCONS_00070640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=957bp
MAKEDLKQSIDTAFKEDEVDLADLAKKIHNQFSKQKNEDDFSMLVLVESL
SSFLTSQDVETRLKGTVLLCHYLHECRPNELLEKEIETMMLFLCDRLKDH
HKIQPLVIYGFLGLVSHHPVPEPLILQMIRAIFAEVHVQSLVQADRYNVF
NLFGNLLKLKLNILKQISSDFVFGFIQAIDGERDPRNLVLCFQNSCIVLK
ELDISLFVEDFFEVLSCYFPVEFNPPKENDYGVTREQLVGNLHKCLCSTS
AFAPYSIPLFIEKLSSDMTEAKRDSLAIMTDILSEAGPHLQLFVKDIWMS
IRKDFLFSEDEDLKRDYEKFIRKFVASLAVLEDKTELNHLMENFMKDCCQ
SLKDPDMSIAEQCGRLISVFANASPIVDETILKSLLQPTETALQKNLSPN
QCATCLEFAHYLLSIDISGVSPDLRQQYLEFAGSMSSVLFESLKGDENTK
LTNASVTCLAKIMEVQNLLTDVSTIVDAELISQHFFNMLFNKVKKCPTEP
VNDFMRVLWIHYPSHIREKFLAPLQQLDSEKAVVYIPLLSHCSQDDEAAI
LKYLIKMILPLIDSENVEIFDKFVSSFCELLTKSKTAYTRTDFLDLLIES
VSSRQGFLKHSHLWGFSRIMVCVFNNLPETLQRELINEVKNSIQESTNIS
FKDIFIVFCALYKSNKSDLAEDFEILESFLIKTGNESRNDVLQTLIGLSL
ALLVNRYGASPKVESLLEDFDNSNVLEHAIGRLSWIVKGCVSSWQPNSPK
FLSKLIECLTNDQTAPKATEGFELFCCPNDPFIEAANWSKKLMSRQRFSQ
FVLPQLVQLYHEGTDLTRSCILKSISFTLQATPKKILMPYLNKLVPLLLH
SLEIERGENVLASTITTIISLTNENQQVIQDHIQTLIGRLLNVVTHDRMK
VRIVALQCLMKLSTYKYHDIVPLKKNVVKRIAPLLDDKKRLVRKEAVSCS
KVWHLVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043949XLOC_043949Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070640TCONS_00070640Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR024687MMS19_C
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 786..951
e-value: 2.6E-16
score: 59.0
coord: 518..785
e-value: 9.2E-6
score: 24.2
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 3..517
e-value: 1.2E-12
score: 45.8
IPR024687MMS19, C-terminalPFAMPF12460MMS19_Ccoord: 545..892
e-value: 2.2E-40
score: 139.0
NoneNo IPR availablePFAMPF14500MMS19_Ncoord: 47..305
e-value: 1.6E-73
score: 247.4
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 21..102
coord: 144..490
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 548..949
coord: 430..468

Blast
[Close]
BLAST of TCONS_00070640-protein vs. Swiss-Prot (Human)
Match: MMS19 (MMS19 nucleotide excision repair protein homolog OS=Homo sapiens GN=MMS19 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 2.403e-60
Identity = 151/470 (32.13%), Postives = 247/470 (52.55%), Query Frame = 0 
Query:   30 NQFSKQKNEDDFSMLVLVESLSSFLTSQDVETRLKGTVLLCHYLHECRPNELLEKEIETMMLFLCDRLKDHHKIQPLVIYGFLGLVSHHPVPEPLILQMIRAIFAEVHVQSLVQADRYNVFNLFGNLLKLKLNILKQISSDFVFGFIQAIDGERDPRNLVLCFQ-NSCIVLKELDISLFVEDFFEVLSCYFPVEFNPPKENDYGVTREQLVGNLHKCLCSTSAFAPYSIPLFIEKLSSDMTEAKRDSLAIMTDILSEAG-PHLQLFVKDIWMSIRKDFLFSEDEDLKRDYEKFIRKFVASL--AVLEDKTE--LNHLMENFMKDCCQSLKDPDMSIAEQCGRLISVFANASPIVDETILKSLLQPTETALQKNLSPNQCATCLEFAHYLLSIDISGVSPDLRQQYLE-FAGSMSSVLFESLKGDENTKLTNASVTCLAKIMEVQNLLTDVSTIVDAELISQHFFNMLFNK 492
            +Q +      ++++L +VE+L S L + +  TR +   LL   L  C    LLEKE+  ++LF  +RLKDHH + P V+ G   L     +P  L + +++AIF EVHVQSL Q DR+ V+N+  N ++ +   LK + +DF FGFIQ +DGE+DPRNL++ F+    ++ ++  +  FVE+ FEV SCYFP++F PP  + +G+ RE L+ +L   L ST  FA + +PL IEK+ S++  AK DSL  +    +  G   L+ F+  +W SIR++   +  E ++ +    +    A L  +VL    E  L+  + N ++DC   L +PDM +     +L+   A AS    +++  ++L        K+   +Q  T LE     L +       D  Q+ L  F   + S++F +L  D +T+L    +    + + V     D+ +  D EL   H + + F K
Sbjct:   33 DQVAADVKSGNYTVLQVVEALGSSLENPEPRTRARAIQLLSQVLLHCH-TLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCVALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQVMDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDLILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSLWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHLCEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGFLKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALT-DPSTQLQLVGI----RTLTVLGAQPDLLSYEDLELAVGHLYRLSFLK 496

HSP 2 Score: 109.768 bits (273), Expect = 2.931e-24
Identity = 87/267 (32.58%), Postives = 132/267 (49.44%), Query Frame = 0 
Query:  701 ALLVNRYGASPKVESLLE--------DFDNSNVLEHAIGRLSWIVKGCVSSWQPNSPKFLSKLIECLTNDQTAPKATEGFELFC--CPNDPFIEAANWSKKLMSRQRFSQFVLPQLVQLYHEGTDLTRSCILKSISFTLQATPKKILMPYLNKLVPLLLHSLEIERGENVLASTITTIISLTNENQQVIQDHIQTLIGRLLNVVTHDRMKVRIVALQCLMKLSTYKYHDIVPLKKNVVKRIAPLLDDKKRLVRKEAVSCSKVWHLVA 957
            A L+N++ A  +++  L+           +      A   L W+ K  V  + P S    ++L+  L++ +  P A +GF L    C  D    A +   ++M RQRF    +P LVQ +H      +   LK +S  L   PK +L+P L  L+ LLL +L       V  ST++ +  L  E  QV+  H+ TL+ + LN+ +   M VRI ALQC+  L+      ++P K  V++ +A  LDDKKRLVRKEAVS    W L+ 
Sbjct:  762 AGLLNKHPAGQQLDEFLQLAVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADGFSLLMSDC-TDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSCPDCV-VQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFLLG 1026
The following BLAST results are available for this feature:
BLAST of TCONS_00070640-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMS192.403e-6032.13MMS19 nucleotide excision repair protein homolog O... [more]
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