minicollagen 1 (polypeptide) - C. hemisphaerica

Overview
Nameminicollagen 1
Unique NameTCONS_00070997-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070997-protein ID=TCONS_00070997-protein|Name=minicollagen 1|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAARFILSCLLVGVAMANAKTLHEMLKRDANPCSAPCPAACAPACAPVCC
APPPPPPPPPPPPPPPPPPPPPPPPAPIPGNPGPPGRPGPPGAPGPAGPP
GLPGPPGMPGPPGPGGLPGQPAPPPPPCPSVCVTQCVPTCPQYCCPARK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044122XLOC_044122Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070997TCONS_00070997Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 90..106
score: 34.12
coord: 31..47
score: 30.59
coord: 64..85
score: 43.64
coord: 52..64
score: 52.31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..125
NoneNo IPR availableSUPERFAMILY103589Mini-collagen I, C-terminal domaincoord: 127..148
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 79..122
e-value: 5.8E-7
score: 29.1

Blast
The following BLAST results are available for this feature:
BLAST of minicollagen 1 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top