TCONS_00071016-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071016-protein
Unique Name	TCONS_00071016-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	764

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071016-protein ID=TCONS_00071016-protein|Name=TCONS_00071016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp
MDPFKKLALLKAKMTGMSRAQIAEAIRNMTLGINPTEQEPDLTTPQNQPL
QGQSQNAAGGFSYTIDNITRLKRYLILGSDKAKYKGGSQAENIQNIPVVE
ELLKEGKGKEVIDLIVQFAREARISKEENILMVLRDCMMYQGDAMYEDRT
IQRAAYDSIVKICNIPTKLFRLMELCKPCYQNNWKPLTKPVSKTQLRKKA
KQEAKQAAQQQNQRPSTSTEIPAAQPPSAKVPVETCEIVEEGEPPKKKKK
KMKKKKKPKEPKPQTTQKFKKSSSWGRARRRGVGNFYTDSSKDANRLLLL
MTKYKQRHNWNHVQTLGYCHPKMTGDEEQVKNIVLQYCTRGKEKLDKYLV
KKKIDGNQPMDPITSQILQHIKVLEEVKNLKPDVPADVERLLQLLHQYGI
REVPQEFEVDAAGQMVQVENTQRKKCSFQLTREHLPNGFQKLKEVWVALL
QDMPMTALIRNLGKMTSLGLFDDPANREIVKKVLGDGSILNKARIHPVKI
LLASKMYEQGHGDQGQSHQPQQEYPTMSLSQQLRQQRQRQQQPQQPQQRV
PTKEPLTWIPNAEISKALNDAFYLSFRQPGKNSSFRTDKKFMLNLDVSGS
MDWRNCVGCDFLTPAAASFALAMITMKVEPHCSVFAFGRTLQNIDHLLKR
DMTIREAIQLGRSINFGATDCALPMVHATQNRLDVDVFIVYTDSETWVGK
VHPSEALKNYRLKMNKPDAKLIVMAMQVNDFTIADPLDRGMFDVCGFDSN
VPDMICEIARGNMS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044129	XLOC_044129	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071016	TCONS_00071016	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002035	VWF_A
IPR008858	TROVE_dom
IPR008979	Galactose-bd-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 191..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..556
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..58
None	No IPR available	SUPERFAMILY	140864	TROVE domain-like	coord: 45..203
None	No IPR available	SUPERFAMILY	140864	TROVE domain-like	coord: 555..577 coord: 427..515
None	No IPR available	SUPERFAMILY	140864	TROVE domain-like	coord: 264..381
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 565..764 e-value: 9.8E-15 score: 53.9
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 587..761
IPR008858	TROVE domain	PFAM	PF05731	TROVE	coord: 55..577 e-value: 3.6E-57 score: 194.1
IPR008858	TROVE domain	PROSITE	PS50988	TROVE	coord: 54..584 score: 34.847
IPR008979	Galactose-binding domain-like	GENE3D	2.60.120.260		coord: 14..564 e-value: 0.08 score: 11.7

Blast

[Close]

BLAST of TCONS_00071016-protein vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 6.973e-73
Identity = 168/489 (34.36%), Postives = 251/489 (51.33%), Query Frame = 0

Query:  271 KSSSWGRARRRGVGNFYTDSSKDANRLLLLMTKYKQRHNWNHVQTLGYCHPKMTGDEEQVKNIVLQYCTRGKEKLDKYLVKKKIDGNQPMDPITSQILQHIKVLEEVKNLKPDVPADVERLLQLLHQYGIREVPQEFEVDAAGQMVQVENTQRKKCSFQLTREHLPNGFQKLKEVWVALLQDMPMTALIRNLGKMTSLGLFDDPANREI--VKKVLGDGSILNKARIHPVKILLASKMYEQGHGDQGQSHQPQQEYPTMSLSQQLRQQRQRQQQPQQPQQRVPTKEPLTWIPNAEISKALNDAFYLSFR--QPGKNSSFRTDKKFMLNLDVSGSMDWRNCVGCDFLTPAAASFALAMITMKVEPHCSVFAFGRTLQNIDHLLKRDMTIREAIQLGRSINFGATDCALPMVHATQNRLDVDVFIVYTDSETWVGKVHPSEALKNYRLKMNKPDAKLIVMAMQVNDFTIADPLDRGMFDVCGFDSNVPDMI 755
            K   WGRA R+ + ++Y +  K    L L +TKYKQR+ W+H   L   H K + +      IV +Y T+G +++ + L K+K      +   T ++L++++ +E+VK  + ++      ++ L+ ++                              +L REHL     K KEVW ALLQ+MP+TAL+RNLGKMT+  + + P N E+  V + L +  +L KARIHP  IL+A + Y+ GHG +G+                                       L W P+ EI KAL+ AFY +F+  +P       T K+F+L +DVS SM+ R  V    L  +  + A+ M+  + E    V AF   +  +   +  DMT+++ +     I  G TDC+LPM+ A +     DVFIV+TD+ET+ G VHP+ AL+ YR KM+ P AKLIV  M  N FTIADP DRGM D+CGFD+   D+I
Sbjct:  140 KCGMWGRALRKAIADWYNE--KGGMALALAVTKYKQRNGWSHKDLLRLSHLKPSSEGLA---IVTKYITKGWKEVHE-LYKEK-----ALSVETEKLLKYLEAVEKVKRTRDEL-----EVIHLIEEH------------------------------RLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLE-PGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGK---------------------------------------LKWRPDEEILKALDAAFYKTFKTVEP-------TGKRFLLAVDVSASMNQR--VLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEM--VPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVI 530

The following BLAST results are available for this feature:

BLAST of TCONS_00071016-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071016-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RO60	6.973e-73	34.36	60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G...	[more]

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TCONS_00071016-protein (polypeptide) - C. hemisphaerica