TCONS_00071053-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071053-protein
Unique Name	TCONS_00071053-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	559

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071053-protein ID=TCONS_00071053-protein|Name=TCONS_00071053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp
MRRKIAIIRQHQVLQDIIGTFKTESENSLESDDYLVVPCDLTDLKKLDVF
MEKFGIDFNVPSLFFSECVLTYVDLKHSKNLIGWIQKRFQQAAVVIYEQI
RPDDAFGYVMMRHFDKIQSPLRRIKDLFTIQKHREVFEALNYSNVLGFDM
NFFYEHYLDECEKGRMIRLELFDEFEEWHLKCSHYCIIAAFTGLLTNCNL
PARMFPYYAPPEDQPPQPLSYTPTTLNEEQLEVKRFGHRCVQLTNNQFLC
MGGFGVTPDGGHKRLNTGLLINSNDVPKCTQINELDDVLYNSITRLSDNR
FFVLGGRKSPKTTIPKYGIFVFDGNLVCPVVTKDAETQEEIMVVSRWRHS
AVLFKGQILLFGGVTTDNRTLNDLWCIDVNGLTVRKISTTGDVELFARHS
HTMSVWKKENVVVYGGLEHSMHLSNQMLLLSLKDGEYHIKEMKFQVPLPK
RYAHTSHVVNDTMIVVGGVDTSGQFSTNEILLIDLIGRTFRGLKFPACNP
ASPLMFHNHQSLLLTRGREGCEKEGRLLVVGGGGNCFSFGTHFNRCVVSL
DLSDEIKLT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044142	XLOC_044142	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071053	TCONS_00071053	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007213	Ppm1/Ppm2/Tcmp
IPR015915	Kelch-typ_b-propeller
IPR029063	SAM-dependent_MTases

Vocabulary: **Biological Process**
Term	Definition
GO:0032259	methylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 558..559
None	No IPR available	PFAM	PF13418	Kelch_4	coord: 346..388 e-value: 1.3E-6 score: 28.2
None	No IPR available	GENE3D	3.40.50.150		coord: 1..204 e-value: 1.8E-52 score: 177.7
None	No IPR available	SUPERFAMILY	117281	Kelch motif	coord: 342..535
IPR007213	Methyltransferase Ppm1/Ppm2/Tcmp	PFAM	PF04072	LCM	coord: 4..85 e-value: 8.2E-6 score: 25.8
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 211..496 e-value: 6.2E-31 score: 107.0
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 2..192

Blast

[Close]

BLAST of TCONS_00071053-protein vs. Swiss-Prot (Human)
Match: TYW4 (tRNA wybutosine-synthesizing protein 4 OS=Homo sapiens GN=LCMT2 PE=1 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 1.915e-68
Identity = 189/578 (32.70%), Postives = 294/578 (50.87%), Query Frame = 0

Query:    2 RRKIAIIRQHQVLQDIIGTF-KTESENSL--ESDDYLVVPCDLTDLKKLDVFMEKFGIDFNVPSLFFSECVLTYVDLKHSKNLIGWIQKRFQQAAVVIYEQIRPDDAFGYVMMRHFDKIQSPLRRIKDLFTIQKHREVFEALNYSNVLGFDMNFFYEHYLDECEKGRMIRLELFDEFEEWHLKCSHYCIIAAFTGLLTNCNLPARMFPYY-APPEDQPPQPLSYTPTTLNEEQLEV---KRFGHRCVQLTNNQFLCMGGFGVTPDGGHKRLNTGLLIN--------SNDVPKCTQINELDDVLYNSITRLSDNRFFVLGGRKSPKTTIPKYGIFVF------DGNLVCPVVTKDAETQEEIMVVSRWRHSAVLFKGQ----ILLFGGVTTDNRTLNDLWCIDVNGLTVRKISTTGDVELFARHSHTMSVWKKENVVVYGGLEHSMHLSNQMLLLSLKDGEYHIKEMKFQVPLPKRYAHTSHVVNDTMIVVGGVDTSGQFSTNEILLIDLIGRTFRGLKFPACNPASPLMFHNHQSLLLTRGREGCEKEGRLLVVGGGGNCFSFGTHFNRCVVSLDLSD 554
            RRK   I +   L  + G F + E  ++L  ES DY ++  DL  L++++  +   G+D   P+L  +E VLTY++ + +  LI W  +RF  A  V+YEQ+RP DAFG  M++HF ++ SPL  ++    ++  R  F    ++     DMN FY  +L   E+ R+  +E FDEFEEWHLKC+HY I+AA  G   +  L   +FP   A P   P  P    P ++   + +V   KR+GH  V L+ +  L  GGFG   +G H R++   L++         + +  C    + D  LY+++TRLS++R  VLGGR SP +  P  G+         D N     VT     +++   +  WRHS      Q    + ++GG +     L+D   + V  +   +I   G+V   ARHSH+   W+   ++  G       L++ + L  +  G +  + +  Q P+  RY+HT+HV+N  +++VGG+      S   + +I+L        +        PLM HNH S+LL        +E +LL++GGGGNCFSFGT+FN   V+LDLS 
Sbjct:  120 RRKAERIGETPELCALTGPFERGEPASALCFESADYCILGLDLRQLQRVEEALGAAGLDAASPTLLLAEAVLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQDAFGQFMLQHFRQLNSPLHGLERFPDVEAQRRRFLQAGWTACGAVDMNEFYHCFLPAEERRRVENIEPFDEFEEWHLKCAHYFILAASRGDTLSHTL---VFPSSEAFPRVNPASPSGVFPASVVSSEGQVPNLKRYGHASVFLSPDVILSAGGFGEQ-EGRHCRVSQFHLLSRDCDSEWKGSQIGSCGTGVQWDGRLYHTMTRLSESRVLVLGGRLSPVS--PALGVLQLHFFKSEDNNTEDLKVTITKAGRKDDSTLCCWRHSTTEVSCQNQEYLFVYGGRSVVEPVLSDWHFLHVGTMAWVRIPVEGEVPE-ARHSHSACTWQGGALIAGGLGASEEPLNSVLFLRPISCG-FLWESVDIQPPITPRYSHTAHVLNGKLLLVGGIWIHSS-SFPGVTVINLTTGLSSEYQIDTTYVPWPLMLHNHTSILLP-------EEQQLLLLGGGGNCFSFGTYFNPHTVTLDLSS 681

The following BLAST results are available for this feature:

BLAST of TCONS_00071053-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071053-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TYW4	1.915e-68	32.70	tRNA wybutosine-synthesizing protein 4 OS=Homo sap...	[more]

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TCONS_00071053-protein (polypeptide) - C. hemisphaerica