Dmrt-E Doublesex and mab-3 related trasncription factor (polypeptide) - C. hemisphaerica

Overview
NameDmrt-E Doublesex and mab-3 related trasncription factor
Unique NameTCONS_00071068-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071068-protein ID=TCONS_00071068-protein|Name=Dmrt-E Doublesex and mab-3 related trasncription factor|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MKQQLEQYHNQAMMNELKVELPFNDATSPTPSGTAATSPTHDASKQPSNN
SRAPKCTRCRNHGVISDLRGHKHKCYWRDCSCTKCLISSDRQRATADRIA
LFRQQVRQISAEDRHHRREKRKYSNLDEDVSYLTSMTTKIPSPNAHPPSL
HKMTSSSSNHCPPPQDSPYYWSDEKTTRNTPEILRMIFPFYEPVALSSIS
RENNYDLLQSVLSISSYLLEKRQSSSSYYRPPHSPPPPPPSSFYKTAHAS
GRCCSSPYCPVNSYLTLRKKSPEIMQHLPTPPLTAVSPSYDRSARSERSE
TNQPVAESKPKKFRFSTDTELPYCDACQKFGIKGDKFCPLCGILFSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044151XLOC_044151Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071068TCONS_00071068Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001275DM_DNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001275DM DNA-binding domainSMARTSM00301DM_3coord: 52..105
e-value: 5.2E-16
score: 69.2
IPR001275DM DNA-binding domainGENE3D4.10.1040.10coord: 51..98
e-value: 5.1E-17
score: 61.1
IPR001275DM DNA-binding domainPFAMPF00751DMcoord: 52..97
e-value: 1.1E-16
score: 60.4
IPR001275DM DNA-binding domainPROSITEPS40000DM_1coord: 56..85
IPR001275DM DNA-binding domainPROSITEPS50809DM_2coord: 56..103
score: 12.113
IPR001275DM DNA-binding domainSUPERFAMILY82927Cysteine-rich DNA binding domain, (DM domain)coord: 50..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 276..311

Blast
[Close]
BLAST of Dmrt-E Doublesex and mab-3 related trasncription factor vs. Swiss-Prot (Human)
Match: DMRT2 (Doublesex- and mab-3-related transcription factor 2 OS=Homo sapiens GN=DMRT2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.110e-18
Identity = 39/85 (45.88%), Postives = 47/85 (55.29%), Query Frame = 0 
Query:   22 PFNDATSPTPSGTAATSPTHDASKQPSNNSRAPKCTRCRNHGVISDLRGHKHKCYWRDCSCTKCLISSDRQRATADRIALFRQQV 106
            P     SP  +G            +P   SR PKC RCRNHGV+S L+GHK  C WRDC C  CL+  +RQR  A ++AL RQQ 
Sbjct:   89 PLAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQA 173
The following BLAST results are available for this feature:
BLAST of Dmrt-E Doublesex and mab-3 related trasncription factor vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMRT21.110e-1845.88Doublesex- and mab-3-related transcription factor ... [more]
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