TCONS_00071078-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071078-protein
Unique Name	TCONS_00071078-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	780

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071078-protein ID=TCONS_00071078-protein|Name=TCONS_00071078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=780bp
MSLFSAGPNIEVIKTTGQKLKISTSSRLGHIIDGKGELVLMRSKNGNSFS
LNIKNDTGTKKDSFKFNYPKDSVKCSFRENQLCFTYTIKTTNIKTGIISG
EILDLKSFKEFNSLMKQMETKRFKPIEIVSSGSNINATKPSIQSLSQKNR
SFEYCSNTETETGSFKTEQNAITPKRESDNMNSKENTPKSIPKRMAMKMK
GGEDNRKPLDTLKTKQFYSKDTNTPKREVKSNFPVYSQSKFNKIPKFIKN
RLPSPIPFRKNKEKITRESNESIEDFFEDDNSLIGFANLGNTCYMNAILQ
CLLNIPNFYQELHNQNNLAVLPKESLYKRLCQLGFAKHNLQGSETQKQHL
QLVKESISSAANRFSGYSQHDAHEFLCQCMDQLKEDLLTQMTKKKEEMQL
SIEELKSVFVCPIKENLETTVTHSIRCLGCKEKVIKDEEYHDFSLVIPEY
DENFNPGTLSIEKLLNLYFADEEIEYTCEKCQNSSSVLTHQMKKLPRILV
LHLKRYDSYEMKKSDSIKIPKIMDISKVVSDEVAFPSDFNLDCSLWKDST
TLKSGVKRKSEDSSFLSNAPLNKTPKVNRNSYINEMSAAEILAISARESR
KEESNSSYSNPSHSFTKIQGPRKTLTFTSDSEFDSNMEVKTEPKLSPEEQ
QIKEAMELSIQEYKSQQRLDMSTFSLSKQTSTPSSIKTEPFFQVLSSDSD
AITDEKQTYRLVGVVNHHGMNTASGHYTCDCYDFKSKQWRNYNDSSVKEM
DEYDWNRRSSSAYIVFYMHDKCYQSIQNKY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044160	XLOC_044160	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071078	TCONS_00071078	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001394	Peptidase_C19_UCH
IPR018200	USP_CS
IPR028889	USP_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0016579	protein deubiquitination
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 388..408
None	No IPR available	GENE3D	3.90.70.10		coord: 272..780 e-value: 1.1E-73 score: 247.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 602..621
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..189
None	No IPR available	CDD	cd02257	Peptidase_C19	coord: 285..768 e-value: 9.75937E-27 score: 109.11
None	No IPR available	SUPERFAMILY	54001	Cysteine proteinases	coord: 704..767 coord: 283..532
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 285..767 e-value: 3.0E-45 score: 154.6
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00973	USP_2	coord: 709..727
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00972	USP_1	coord: 285..300
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 284..770 score: 38.987

Blast

[Close]

BLAST of TCONS_00071078-protein vs. Swiss-Prot (Human)
Match: UBP37 (Ubiquitin carboxyl-terminal hydrolase 37 OS=Homo sapiens GN=USP37 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 5.142e-52
Identity = 148/430 (34.42%), Postives = 211/430 (49.07%), Query Frame = 0

Query:  131 SGSNINATKPSIQSLSQKNRSFEYCSNTETETGSFKT--EQNAITPKRESDNMNSKENTPKS-----IPKRMAMKMKGGEDNR-KPLDTLKTKQFY----------SKDTNTPKREVKSNFPVYSQSKFNKIPKFIKNRLPSPIPFRKNK----EKITRESNESIEDFFEDDNSLIGFANLGNTCYMNAILQCLLNIPNFYQELHNQN-NLAVLPKESLYKRLCQLGFAKHNLQGSETQKQHLQLVKESISSAANRFSGYSQHDAHEFLCQCMDQLKEDLLTQMTKKKEEMQLSIEE------LKSVFVCPIKENLETTVTHSIRCLGCKEKVIKDEEYHDFSLVIPEYDENFNPGTLSIEKLLNLYFADEEIEYTCEKCQNSSSVLTHQMKKLPRILVLHLKRYD-----SYEMKKSDSIKIPKIMDIS 526
            +GS I  T PS+ S S   RS    + TE       T  E N   PK    + N+K  T  S       +   + +K  E+NR   L  L++  FY          S  TN  +  V S  P   +S            LP P+P    K    +  T  +   +         L GF+NLGNTCYMNAILQ L ++ +F  +L  Q      +P  +L +R   L   K ++  SET+K  L+ VK +IS+ A RFSGY Q+DAHEFL QC+DQLKED + ++ K  +   +S EE          + CP+  NLE  V HSI C  C E + K E+++D S+ +P   +   P   SI+  L+L+F  EE+EY+CEKC    +++ H+  +LPR+L+LHLKRY      S   K    + IP+ + +S
Sbjct:  175 AGSGIARTIPSLTSTSTPLRSGLLENRTEKRKRMISTGSELNEDYPKENDSSSNNKAMTDPSRKYLTSSREKQLSLKQSEENRTSGLLPLQSSSFYGSRAGSKEHSSGGTNLDRTNVSSQTPSAKRSL---------GFLPQPVPLSVKKLRCNQDYTGWNKPRVPLSSHQQQQLQGFSNLGNTCYMNAILQSLFSLQSFANDLLKQGIPWKKIPLNALIRRFAHL-LVKKDICNSETKKDLLKKVKNAISATAERFSGYMQNDAHEFLSQCLDQLKED-MEKLNKTWKTEPVSGEENSPDISATRAYTCPVITNLEFEVQHSIICKACGEIIPKREQFNDLSIDLPRRKKPLPP--RSIQDSLDLFFRAEELEYSCEKCGGKCALVRHKFNRLPRVLILHLKRYSFNVALSLNNKIGQQVIIPRYLTLS 591

The following BLAST results are available for this feature:

BLAST of TCONS_00071078-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071078-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBP37	5.142e-52	34.42	Ubiquitin carboxyl-terminal hydrolase 37 OS=Homo s...	[more]

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TCONS_00071078-protein (polypeptide) - C. hemisphaerica