TCONS_00071108-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071108-protein
Unique Name	TCONS_00071108-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	491

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071108-protein ID=TCONS_00071108-protein|Name=TCONS_00071108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
GISNQTTFDSLNGQLDFLYEEPYRRTHSLRPGQKKKVFTPGRFPETLHFF
YFSLNNLVTFWIKLIFIHFSAKKQKMNESIHGLTAIHPPGNFSFNDGGDE
AGESKNMIYFFLAINCIFAFFGSVGNICAAVVLSFGKQRSNHQNLFLLNL
AIADLCVLVISFPVLAVKWLSGNNWPLGEPMCKLLSSSADFFHIVSLATI
VAIAIARYHTIVHSMDAKWTLRRIRLIILFIWVFSFVAESIPSIMSYQLY
EQKYKIMNETRILFRVCSHDAQSTMVAVDNIVETFVWYFIPLLIILLTFL
RIHFFLKEHMRQSSVHQTSSNIQTRYKKLRKVTKMLAVVVFCFALLMLPW
NIIKLLEQFTDLRIEETHRKFAATFLVLNSCVNPFIYYMMSAEFRMEFKK
QIIRLKLRMRESVLSVQHHSSAGSDGTQATHTIRRRIEPLDWNHDDGGSG
MSIVYETLRKRSLMDGYICHDIKDVVSVLHKCNNNLEETLL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044190	XLOC_044190	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071108	TCONS_00071108	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 223..244 score: 22.02 coord: 332..356 score: 27.78 coord: 110..134 score: 16.65 coord: 189..211 score: 25.93 coord: 143..164 score: 37.17 coord: 369..395 score: 30.7 coord: 280..303 score: 21.96
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 125..387 e-value: 6.4E-40 score: 137.0
None	No IPR available	GENE3D	1.20.1070.10		coord: 93..439 e-value: 3.0E-62 score: 209.9
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 104..418
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 125..387 score: 35.918

Blast

[Close]

BLAST of TCONS_00071108-protein vs. Swiss-Prot (Human)
Match: NPFF2 (Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFFR2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.873e-22
Identity = 85/301 (28.24%), Postives = 133/301 (44.19%), Query Frame = 0

Query:  120 FFGSVGNICAAVVLSFGKQRSNHQNLFLLNLAIADLCVLVISFPVLAVKWLSGNNWPLGEPMCKLLSSSADFFHIVSLATIVAIAIARYHTIVHSMDAKWTLRRIRLIILFIWVFSFVAESIPSIMSYQLYEQKYKI----MNETRILFRVCSHDAQS-------TMVAVDNIVETFVWYFIPLLIILLTFLRIHFFLKEHMRQSSVHQTSSNIQTRY---KKLRKVTKMLAVVVFCFALLMLPWNIIKLLEQFTDLRIEETH------RKFAATFLVLNSCVNPFIYYMMSAEFRMEFKK 400
            F   +GN     ++   K      NLF+LNLAI+DL V +   P+  +  +    WP G  MCK+           S+ T+VAIA+ R+  +V+    K T++   +II+ IWV +    S  ++M +   E+ Y++     N+T  ++  C  D  +       T V   NI      Y  PL +I++ + RI   L    R +  H    N +  +   +K +K+ KML +V   F L  LP   + +L  + DL   E          FA      NS VNP IY   +  FR  F++
Sbjct:  159 FLCMMGNTVVCFIVMRNKHMHTVTNLFILNLAISDLLVGIFCMPITLLDNIIAG-WPFGNTMCKISGLVQGISVAASVFTLVAIAVDRFQCVVYPFKPKLTIKTAFVIIMIIWVLAITIMSPSAVMLHVQEEKYYRVRLNSQNKTSPVY-WCREDWPNQEMRKIYTTVLFANI------YLAPLSLIVIMYGRIGISL---FRAAVPHTGRKNQEQWHVVSRKKQKIIKMLLIVALLFILSWLPLWTLMMLSDYADLSPNELQIINIYIYPFAHWLAFGNSSVNPIIYGFFNENFRRGFQE 448

The following BLAST results are available for this feature:

BLAST of TCONS_00071108-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071108-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPFF2	7.873e-22	28.24	Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFF...	[more]

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TCONS_00071108-protein (polypeptide) - C. hemisphaerica