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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00071147-protein ID=TCONS_00071147-protein|Name=TCONS_00071147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=854bp
MGESKEDSDNMDEYHFKRRILRIKNVPMSFANVLASKLIHLKATQLRHKD
EQLLIEVVGNSTLTDDSILRTLNIMNHYKQRNETYRKDEIDIKSPVVLFT
NLPSDTDEDMMQMAVQKFGITLNTFTFIKWKSVTFSRYGYVHYAELESAE
NCIKHYHTNQLNCSRLYCCSLPICITSLEVLKKCTRFVQVDDISRITKKK
TKNILKNACPHIDEEIERYISKRWEITEDQKSCSLMIQWPTSAHALTCFN
QFENYKNNHKDISLTVPQDVDLQEDFDFCLALPQPKIIQYFVKELEHRMI
NIDEEKTHCNIILPMASNNSRQPYPQQIPQISPIYTLPSNHGIIRPQPAS
RPLLRGPFYCTVNPAQEPTPIYVQHPEPAITQTMMMARQQHLQHLHQQQQ
AQKMSQGLLGSPLTRHAFPGQPQFRQLPPGLVHHRPPVSGQALPRQQSPG
QTRPKPPLLGSNHIPVTGQMHPNHFNLVRLSNFQQQGHPGPINQPLAGQR
PPNSGQAGPIPHQHHVSAKFWTHNNHQHGPNNHQPTQAQSPTSPIRQLVR
QHHQQANAATKASPEKSLPPRSQLIDDESPVSPNRPIDNMISKMYQNANA
IMTGTPPDVQSTASDGWGSGKSSKRYSVMKKSATKATMNLKIDSADGKEP
LEIPQYKLATNGLRQSGSPNISQEDNKCPPKRLQDERSNPSQNMRVKTNQ
QFVNIYPGHSRRLPTQGKHQTEGILPSPKSQLPQQGIKQSSEANHNVIWT
FGQQQYDKPLFQYCPVPKMRSLDQQMEPERDEEGSRFLTHIMTEHRRVEK
EKIDCGGVDSDEKQDQTGQQIKEERNNSEKRQIVSSETPFKWSNATKQMF
GRLF Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000504 | RNA recognition motif domain | SMART | SM00360 | rrm1_1 | coord: 96..169
e-value: 0.0025
score: 27.1 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 100..162
e-value: 2.7E-6
score: 27.0 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 89..168 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 76..170
e-value: 8.0E-8
score: 31.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 661..696 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 410..470 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 713..739 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 484..588 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 799..838 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 603..624 |
| None | No IPR available | CDD | cd00590 | RRM_SF | coord: 97..169
e-value: 1.2549E-8
score: 51.9221 |
Blast
The following BLAST results are available for this feature:
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