TCONS_00071147-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071147-protein
Unique NameTCONS_00071147-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071147-protein ID=TCONS_00071147-protein|Name=TCONS_00071147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=854bp
MGESKEDSDNMDEYHFKRRILRIKNVPMSFANVLASKLIHLKATQLRHKD
EQLLIEVVGNSTLTDDSILRTLNIMNHYKQRNETYRKDEIDIKSPVVLFT
NLPSDTDEDMMQMAVQKFGITLNTFTFIKWKSVTFSRYGYVHYAELESAE
NCIKHYHTNQLNCSRLYCCSLPICITSLEVLKKCTRFVQVDDISRITKKK
TKNILKNACPHIDEEIERYISKRWEITEDQKSCSLMIQWPTSAHALTCFN
QFENYKNNHKDISLTVPQDVDLQEDFDFCLALPQPKIIQYFVKELEHRMI
NIDEEKTHCNIILPMASNNSRQPYPQQIPQISPIYTLPSNHGIIRPQPAS
RPLLRGPFYCTVNPAQEPTPIYVQHPEPAITQTMMMARQQHLQHLHQQQQ
AQKMSQGLLGSPLTRHAFPGQPQFRQLPPGLVHHRPPVSGQALPRQQSPG
QTRPKPPLLGSNHIPVTGQMHPNHFNLVRLSNFQQQGHPGPINQPLAGQR
PPNSGQAGPIPHQHHVSAKFWTHNNHQHGPNNHQPTQAQSPTSPIRQLVR
QHHQQANAATKASPEKSLPPRSQLIDDESPVSPNRPIDNMISKMYQNANA
IMTGTPPDVQSTASDGWGSGKSSKRYSVMKKSATKATMNLKIDSADGKEP
LEIPQYKLATNGLRQSGSPNISQEDNKCPPKRLQDERSNPSQNMRVKTNQ
QFVNIYPGHSRRLPTQGKHQTEGILPSPKSQLPQQGIKQSSEANHNVIWT
FGQQQYDKPLFQYCPVPKMRSLDQQMEPERDEEGSRFLTHIMTEHRRVEK
EKIDCGGVDSDEKQDQTGQQIKEERNNSEKRQIVSSETPFKWSNATKQMF
GRLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044225XLOC_044225Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071147TCONS_00071147Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 96..169
e-value: 0.0025
score: 27.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 100..162
e-value: 2.7E-6
score: 27.0
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 89..168
NoneNo IPR availableGENE3D3.30.70.330coord: 76..170
e-value: 8.0E-8
score: 31.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 661..696
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 410..470
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 713..739
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..588
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 799..838
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 603..624
NoneNo IPR availableCDDcd00590RRM_SFcoord: 97..169
e-value: 1.2549E-8
score: 51.9221

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071147-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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