TCONS_00071256-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071256-protein
Unique NameTCONS_00071256-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071256-protein ID=TCONS_00071256-protein|Name=TCONS_00071256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MGLLNLIRKMKKNKNKEMRILLLGLDNAGKTTILKSLASEDISHITPTQG
FNIKSVQSSGILLNVWDIGGQKTIRPYWRNYFENTDVLIYVIDSADQQRF
EESGFQLAELLEEEKLQGVPVLVFANKQDLMNAAKSDVIMDTMSLNDIKD
RPWQIQACSALSGEGLSHGLDWIQKNIKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044291XLOC_044291Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071256TCONS_00071256Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 119..140
score: 38.24
coord: 19..42
score: 59.31
coord: 47..71
score: 26.35
coord: 74..99
score: 30.77
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 6..177
e-value: 1.2E-69
score: 233.2
NoneNo IPR availableSMARTSM00178sar_sub_1coord: 1..177
e-value: 5.5E-21
score: 85.7
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..179
e-value: 2.2E-55
score: 200.0
NoneNo IPR availableGENE3D3.40.50.300coord: 2..179
e-value: 1.0E-49
score: 167.8
NoneNo IPR availableCDDcd04155Arl3coord: 3..176
e-value: 2.09465E-93
score: 271.192
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 16..141
e-value: 5.0E-21
score: 73.1
IPR024156Small GTPase superfamily, ARF typePROSITEPS51417ARFcoord: 11..177
score: 21.719
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 16..178

Blast
[Close]
BLAST of TCONS_00071256-protein vs. Swiss-Prot (Human)
Match: ARL3 (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.863e-85
Identity = 125/179 (69.83%), Postives = 156/179 (87.15%), Query Frame = 0 
Query:    1 MGLLNLIRKMKKNKNKEMRILLLGLDNAGKTTILKSLASEDISHITPTQGFNIKSVQSSGILLNVWDIGGQKTIRPYWRNYFENTDVLIYVIDSADQQRFEESGFQLAELLEEEKLQGVPVLVFANKQDLMNAAKSDVIMDTMSLNDIKDRPWQIQACSALSGEGLSHGLDWIQKNIKS 179
            MGLL+++RK+K   ++E+RILLLGLDNAGKTT+LK LASEDISHITPTQGFNIKSVQS G  LNVWDIGGQ+ IRPYW+NYFENTD+LIYVIDSAD++RFEE+G +LAELLEEEKL  VPVL+FANKQDL+ AA +  I + ++L+ I+DR WQIQ+CSAL+GEG+  G++W+ KN+ +
Sbjct:    1 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 179
The following BLAST results are available for this feature:
BLAST of TCONS_00071256-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL31.863e-8569.83ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
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