TCONS_00071291-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071291-protein
Unique NameTCONS_00071291-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length146

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071291-protein ID=TCONS_00071291-protein|Name=TCONS_00071291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MSGIYYFVIVGKDDNPIFEAEFTQGKTTVLEPQLKGKDDHRHLNQFILHG
ALDLVEEVMWTTNNMYLKNVDKFNEWLVSAFVTASGAKFMMLHDIRNDDG
IKNFFQECYEMYAKLTMNPFYEYNTQIKSSVFERKVQTFGKKYLSV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044306XLOC_044306Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071291TCONS_00071291Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006722Sedlin
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006722Trafficking protein particle complex subunit 2PFAMPF04628Sedlin_Ncoord: 9..142
e-value: 3.9E-47
score: 159.6
NoneNo IPR availableGENE3D3.30.450.70coord: 1..146
e-value: 2.9E-50
score: 169.5
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 1..144

Blast
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BLAST of TCONS_00071291-protein vs. Swiss-Prot (Human)
Match: TPC2B (Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.852e-65
Identity = 92/144 (63.89%), Postives = 109/144 (75.69%), Query Frame = 0 
Query:    1 MSGIYYFVIVGKDDNPIFEAEFTQGKTTVLEPQLKGKDDHRHLNQFILHGALDLVEEVMWTTNNMYLKNVDKFNEWLVSAFVTASGAKFMMLHDIRNDDGIKNFFQECYEMYAKLTMNPFYEYNTQIKSSVFERKVQTFGKKYL 144
            MSG +YFVIVG  DNP+FE EF          + + KDDHRHLNQFI H ALDLV+E MW +NNMYLK VDKFNEW VSAFVTA   +F+MLHDIR +DGIKNFF + Y++Y K +MNPFYE N+ I+SS F+RKVQ  GKK+L
Sbjct:    1 MSGSFYFVIVGHHDNPVFEMEFLPAG------KAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138
The following BLAST results are available for this feature:
BLAST of TCONS_00071291-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPC2B2.852e-6563.89Trafficking protein particle complex subunit 2B OS... [more]
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