TCONS_00071306-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071306-protein
Unique Name	TCONS_00071306-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	923

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071306-protein ID=TCONS_00071306-protein|Name=TCONS_00071306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=923bp
MSSIRGFSYGRRRGSTEISQVGLANYPNESDDSLQGIPSKKSNQESGLLL
RQKKKALLKQNKEKCTKRALETLSSSLSFDENVIKQRSSQNVPFEAYFDI
RKRLETDIDQRKPVNQTMHSSYYRNRHMPCHLEPIKDESIIEPSEDAKNV
KSSESLWLGVINSSEHLAKISHNPTEQQNTNIKLSPKENTSTKLTSNEHT
KKPLKSVQSAAGWEEHVLSLISEGTADTIVKEFSNHNQTQLNKYLDKKKQ
DNKPSLNIESNESLSDVFSTKTIENQESMQKEVHKHIMYDHIDLSELTSK
NVKKMPKKFESRIQQTYPLTPETWSKNIEIKASMQNKNQKGIRKWTDYPQ
EIKEEVLKLSKLSIKNLVVDKPPSQNIELKIATRQRNNNNLLIAVDEWRT
KWLLEKKWQSKTILQLRDGMKNINDHVRLAAVSASGKVILDRKERFRRKE
DMMPEESNWPEVESEIINEIKLLLEDKSNVVGLAASIALYSVNQVDTKAT
RLLLNTVQNGAPSERWIACQCLAEYNIHDDCIIVEMLNIVQNGADPVKTK
RIEAFLRKLSNLTDTIQYMLSERLNSTSWNDRIMACQLFPVLSGPLKKDV
ANKLSYIAWHDWNKEVRMAAATTLGRTGNGKLIHDALCKYLKSPKTSQQI
EALRKISNLGIVTAQLMVPFLLCLKSQHGTVALEAMRVIRLNWLCTDEIV
NTLSMLITSDRNLKVKLNAIKTLGVIGEKNNLMIREILLWCIRFEKDRML
RQASCQAIGKIKYSDKEVINTMQDMLVVEDNKHFRSLISNTLNSLGYEDT
CDESMISAVQERVKELCQKDNVLLKILAGSQSNLLQKYRNSKQIDEAENE
SSEDNDEGDDTFDEDRFSINQPFYPTLEAYRARQITHPSISLPDIQPSYI
PFWSESISSLREEGAQGGVYSLK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044313	XLOC_044313	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071306	TCONS_00071306	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 835..855
None	No IPR available	GENE3D	1.25.10.20		coord: 679..821 e-value: 9.9E-11 score: 40.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 839..865
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..208
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 361..678 e-value: 1.8E-15 score: 56.2
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 415..531 coord: 560..814

Blast

[Close]

BLAST of TCONS_00071306-protein vs. Swiss-Prot (Human)
Match: HEAT4 (HEAT repeat-containing protein 4 OS=Homo sapiens GN=HEATR4 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 5.674e-53
Identity = 144/525 (27.43%), Postives = 257/525 (48.95%), Query Frame = 0

Query:  308 KFESRIQQTYPLTPETWSKNIEIKASMQNKNQKGIRKWTDYPQEIKEEVLKLSK--LSIKNLVVDKPP---SQNIELKIATRQRNNNNLLIAVDEWRTKWLLEKKWQSKTILQLRDGMKNINDHVRLAAVSASGKVILDRKERFRRKEDMMPEESNWPEVESEIINEIKLLLEDKSNVVGLAASIALYSVNQVDTKATRLLLNTVQNGAPSERWIACQCLAEYNIHDDCIIVEMLNIVQNGADPVKTKRIEAFLRKLSNLTDTIQYMLSERLNSTSWNDRIMACQLFPVLSGPLKKDVANKLSYIAWHDWNKEVRMAAATTLGRTGNGKLIHDALCKYLKSPKTSQQIEALRKISNLGIVTAQLMVPFLLCLKSQHGTVALEAMRVIRLNWLCTDEIVNTLSMLITSDRNLKVKLNAIKTLGVIGEKNNLMIREILLWCIRFEKDRMLRQASCQAIGKIKYSDKEVINTMQDMLVVEDNKHFRSLISNTLNSLGYEDTCDESMISAVQERVKELCQKDNVLLKIL 827
            ++  ++ + +P TPE WS     +AS   +  +G  +WT  P   K+ +L++ +  + IK   + K      +++  ++   +R        + EW+T W L  +W  +T+  L   + +++D VR+ A++      L+R      + D      + PEV   ++  ++  L DK+  V +AA+I  Y++   +  A  ++   +  G   + W A QCLA        +I  +L+ +    +    ++    L  LS  T  I  ML+  LNS  W +RI+ACQ F  +SG +  D+ +KL  + W+DWNKEVR AAA  LG+   GK +HD +   L    + +++EAL  I  L ++TA+L+  FL C       V   A        +    ++  L  L+  D   K+K  AI+ LG IG+ +  +  ++LLW I +E+   +R  +C++I  +K     V +T  D+L++E++      +  T+  L   +  ++ M+  ++ R+K L QKD +  KIL
Sbjct:  379 RYNKQLSKVFPETPEKWSAQAIPEASY--RPVQGALRWTALPTPAKDMLLQVGEKDVPIKTRRLKKQAKSLQEDVTWELVVLRR-------MLKEWKTAWALIIEWHHETVENLLQSLGDLHDDVRIKAITTCATAALERPRIATSQRDSDKTIQDLPEV---LLPALEAALCDKNAHVRMAAAICQYAIQSHNPLARNIMQTALLKGNSVDSWAAAQCLALEGTATYPVIKRILHQLFTKKNEDTEEQSYILLSYLSEKTTLIHTMLAVELNSCQWKNRIVACQAFSRISGNVCLDMKHKLIQLMWNDWNKEVRRAAAQALGQMSLGKEVHDIIRVKLGQGNSQERVEALYLIGELKLMTAKLLPSFLHCFSDDFTAVRRAACLAAGALQIRDKMVLECLLNLMQRDPYWKIKAFAIRALGQIGQVSPELT-DLLLWAIHYEESPGVRLEACRSILALKLQGDRVRDTFLDVLLLENHDAVLKEMYQTMKILNLGNEGNQEMLQEIKNRIKTLSQKDLLTHKIL 890

The following BLAST results are available for this feature:

BLAST of TCONS_00071306-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071306-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HEAT4	5.674e-53	27.43	HEAT repeat-containing protein 4 OS=Homo sapiens G...	[more]

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TCONS_00071306-protein (polypeptide) - C. hemisphaerica