TCONS_00071632-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071632-protein
Unique NameTCONS_00071632-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071632-protein ID=TCONS_00071632-protein|Name=TCONS_00071632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MGNSISPHIENAQKTGVCSLKAMKLKELPPEISKLPKTLRTLELSNNSLK
NIPDVIGQFQMLKTLSVNQNQLVDISQQIDKLIKLETLALSSNHLTSFSL
SNAGKMKHLKTVNLSHNRLKSFPIHLCNLPNLDALDLSNNSITTLPDDVK
NLKAIELNLNNNKLNRLNNGLCQCERLKVLRVEENCLDISSMTEAILKQS
KISLIAFDGNTFDMKKFQECDGYEEYISRYAATKKKVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044511XLOC_044511Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071632TCONS_00071632Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 39..52
score: 46.01
coord: 129..142
score: 50.66
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 106..125
e-value: 350.0
score: 1.9
coord: 36..55
e-value: 2.2
score: 17.2
coord: 129..148
e-value: 20.0
score: 11.5
coord: 82..101
e-value: 520.0
score: 0.6
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 152..174
e-value: 200.0
score: 2.6
coord: 35..59
e-value: 19.0
score: 10.9
coord: 129..151
e-value: 0.07
score: 22.3
coord: 82..104
e-value: 61.0
score: 6.8
coord: 106..128
e-value: 40.0
score: 8.3
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 112..228
e-value: 2.8E-17
score: 61.8
coord: 3..111
e-value: 5.8E-23
score: 80.3
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 11..204
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 84..142
e-value: 6.9E-11
score: 41.7
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 153..174
score: 5.394
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 61..82
score: 5.671
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 108..130
score: 7.473
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 38..59
score: 8.074
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 84..105
score: 6.634
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 131..152
score: 8.32

Blast
[Close]
BLAST of TCONS_00071632-protein vs. Swiss-Prot (Human)
Match: LRC57 (Leucine-rich repeat-containing protein 57 OS=Homo sapiens GN=LRRC57 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.445e-70
Identity = 113/240 (47.08%), Postives = 171/240 (71.25%), Query Frame = 0 
Query:    1 MGNS-ISPHIENAQKTGVCSLKAMKLKELPPEISKLPKTLRTLELSNNSLKNIPDV-IGQFQMLKTLSVNQNQLVDISQQIDKLIKLETLALSSNHLTSFSLSNAGKMKHLKTVNLSHNRLKSFPIHLCNLPNLDALDLSNNSITTLPDDVKNLKAIELNLNNNKLNRLNNGLCQCERLKVLRVEENCLDISSMTEAILKQSKISLIAFDGNTFDMKKFQECDGYEEYISRYAATKKKVA 238
            MGNS +  H+E AQKTGV  LK   L E P ++ KL   LRT++LSNN ++++P + IG+F +LK+LS+N N+L  +  +I  L KLETL+L++NHL     S  G++  LKT++LS N+L + P  LC+L +LD +DLS N I ++PD V  L+ IELNLN N++++++  +  C RLK+LR+EENCL++S + ++IL  S+I L+A +GN F++KK +E +GY++Y+ R+ ATKKK A
Sbjct:    1 MGNSALRAHVETAQKTGVFQLKDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIGKFTLLKSLSLNNNKLTVLPDEICNLKKLETLSLNNNHLRELP-STFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVMDLSKNQIRSIPDSVGELQVIELNLNQNQISQISVKISCCPRLKILRLEENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKFA 239
The following BLAST results are available for this feature:
BLAST of TCONS_00071632-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC571.445e-7047.08Leucine-rich repeat-containing protein 57 OS=Homo ... [more]
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