TCONS_00071899-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071899-protein
Unique NameTCONS_00071899-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071899-protein ID=TCONS_00071899-protein|Name=TCONS_00071899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
VSGKIFETNQSTLDRFTDTLLSSDSQDRKRYYCEKQKQFFFNRDRNKFEA
ILFFYQSCGKLFLPPLCSLEEFIEECEFFRLPRAAIDLLKLLEGAELMQN
VKNASRSLRPPRANTYLNRIRNMLDYPNSSIPAILYFTMYCLLIVVSIIR
YCIETLPGSTIDQNLYWTYFEIAGSGFFLLDFLMRLLLSRSPKKFLSEVF
TVIDIITIPSYTTINLLVEIEHYSSLCRFLKALQFLRIARLLRFGKMSRR
VSIVYAIVKDSLQDLRYFFVCLLVIVTTSGSIVYSMEKDSNKLMTNIPES
MWWSLQAYLTIGYGDVIPQTVVGKTFSAFYMAVGILTLMLPMLSLILKLV
KCTKEINLDEKIYVDAE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044637XLOC_044637Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071899TCONS_00071899Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003131T1-type_BTB
IPR005821Ion_trans_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 169..192
score: 23.11
coord: 235..261
score: 21.76
coord: 38..57
score: 43.61
coord: 127..155
score: 34.2
coord: 195..215
score: 25.92
coord: 264..287
score: 22.68
coord: 294..316
score: 41.95
coord: 323..349
score: 24.89
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 1..87
e-value: 1.2E-17
score: 64.0
NoneNo IPR availableGENE3D1.20.120.350coord: 135..258
e-value: 3.5E-15
score: 55.4
NoneNo IPR availableGENE3D1.10.287.70coord: 259..356
e-value: 3.7E-16
score: 58.1
NoneNo IPR availableGENE3D3.30.710.10coord: 1..110
e-value: 6.7E-13
score: 48.0
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 133..342
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 137..340
e-value: 1.1E-21
score: 77.1
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 1..99

Blast
[Close]
BLAST of TCONS_00071899-protein vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 9.682e-43
Identity = 112/381 (29.40%), Postives = 189/381 (49.61%), Query Frame = 0 
Query:    1 VSGKIFETNQSTLDRFTDTLLSSDSQDRKRYYCEKQKQFFFNRDRNKFEAILFFYQSCGKLFLPPLCSLEEFIEECEFFRLPRAAIDLLKLLEGAELMQNVKNASRSLRPPRANTYLNRIRNMLDYPNSSIPAILYFTMYCLLIVVSIIRYCIETLP----------GSTIDQNLY---------WTYF-------EIAGSGFFLLDFLMRLLLSRSPKKFLSEVFTVIDIIT-IPSYTTINL-LVEIEHYSSLCRFLKALQFLRIARLLR------FGKMSRRVSIVYAIVKDSLQDLRYFFVCLLVIVTTSGSIVYSMEKDSNK-LMTNIPESMWWSLQAYLTIGYGDVIPQTVVGKTFSAFYMAVGILTLMLPMLSLI 346
            +SG  FET   TL +F +TLL  D + R RY+   + ++FF+R+R  F+AIL++YQS G+L  P    L+ F EE  F+ L   A+++ +  EG      +K   R L     N +  ++  + +YP SS PA +   +  ++I++SI+ +C+ETLP          GS +  + Y          T F       E     +F  +FL+R     S   F + +  +IDI+  IP + T+   L E    +   +   +L  LR+ RL+R        + S+ + I+   +K S+++L      L + V    S VY  E D  +    +IP++ WW++ +  T+GYGD++P T+ GK   +     G+LT+ LP+  ++
Sbjct:   39 ISGLRFETQLKTLAQFPETLLG-DPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGY-----IKEEERPL---PENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIV 410
The following BLAST results are available for this feature:
BLAST of TCONS_00071899-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA29.682e-4329.40Potassium voltage-gated channel subfamily A member... [more]
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