TCONS_00072033-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072033-protein
Unique NameTCONS_00072033-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072033-protein ID=TCONS_00072033-protein|Name=TCONS_00072033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1143bp
MLLKALTFQLVVVMLLNMVLAFNIDSDSNRIEFIDPLLSDGNTNLFGYAL
GFYKKNDDARLIIGAPMYDNKTGALLSCRVNGDDKSCFHMNATNPNSEER
QDQTLKGEALGISISTTDNSIIACAPLAHGFRIKNGKCFNETSQSFIDPY
TLNTTNKLAKSCYSRRNYFMGRCPVFTDETSYKYSEVPCYQNSQPHPGIS
NYANCLLGNGNVQSFNSNGSLYQFISTSGSGKYTGALVTTADGEKISNFM
NVLDIDDMGSDKDFINNGKVFADKLEYTNRSSLLGYSSIKGNFTGKSLPG
LASGAPRSQIFDGEVMVYQLEINLNGNLTISKDDDTKLVLMDRIPNPVTS
KGGPTMYGASLAAIDINGDGFQDLAIGAPLFSDQFGNRIGQDEGRVFIFI
NNGKAQFDYEVNMTLTGEKQEAARFGSSITNIGDVNGDGTDDLAVGAPWG
GKDGNGAVYIYNVRDGKIVDVPSQILHAPVPNGFFGHSITSSVIDTRVYP
AIAISAPNSNRVFVYKAKTIITLKDNLWVDRVTVPTDINDANCEYKETKY
ECIYFQANIQDESTNAPETFDVEIQFRTDVRESGEGSRAFIFDNVTQTLT
SNLVRNVTFKRGEKKLYRHKLYFSIARATNFEEAVSLTTSYKAADTKNNC
GDGPCAILDQFGTQKGAIEVKYLRQCGTDQICDVNLDIISSEIRVLKGAS
SVVEPLYIGSFNNEVKLIANVKNWNESAYQAKMTIHFHEDFTLLSLTANT
INAKREYDGLAANYTEGNTTFNGTGNLVKFLLDNPILENEVVTVEAQFIV
KYLAKPKFFEYPFKLHVNSTGHDANATNNDVTVDLPMKIQTCVQISLDQA
DVESEKRIKAQVLVYNDTQKPISKPSTAREAGPIVSYNILVQNSGRVPIE
NMSLDVTLVDKVQNQNLIYISDLSIEGRPCLLNNINVGKLTGDNDIQPQL
RRTNETTKDITARRKRRATHAQLTDTRPPIIDCLNGDCVTMTCENVLNVP
VDGIQRLRLTMAVYLETLQKFESEEMVIQVTPRFGGEYGTVTEQANECPT
TIELRQPFKKSEPILIARRVEWWVILVAIVGALIILDIFCVILYRIGFFK
RQRYEDTQPLTGTPNAHIAYMEKYKHKGNGGDDGISTTSSDFD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044730XLOC_044730Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072033TCONS_00072033Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000413Integrin_alpha
IPR013519Int_alpha_beta-p
IPR013649Integrin_alpha-2
IPR013517FG-GAP
IPR018184Integrin_alpha_C_CS
IPR032695Integrin_dom
Vocabulary: Cellular Component
TermDefinition
GO:0008305integrin complex
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0008305 integrin complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1004..1024
NoneNo IPR availableGENE3D1.20.5.930coord: 1067..1103
e-value: 6.2E-10
score: 38.2
NoneNo IPR availableGENE3D2.130.10.130coord: 22..521
e-value: 8.4E-59
score: 199.2
NoneNo IPR availableGENE3D2.60.40.1460coord: 528..682
e-value: 1.8E-12
score: 47.4
NoneNo IPR availableGENE3D2.60.40.1510coord: 683..840
e-value: 2.2E-11
score: 43.5
NoneNo IPR availableGENE3D2.60.40.1530coord: 850..1034
e-value: 7.2E-12
score: 44.5
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 44..138
coord: 211..517
IPR000413Integrin alpha chainPRINTSPR01185INTEGRINAcoord: 424..448
score: 57.27
coord: 350..370
score: 34.84
coord: 281..293
score: 40.34
coord: 1082..1101
score: 41.34
coord: 511..530
score: 16.1
IPR013519Integrin alpha beta-propellorSMARTSM00191int_alpha_rptcoord: 353..414
e-value: 6.4E-8
score: 42.3
coord: 481..527
e-value: 24.0
score: 8.9
coord: 42..94
e-value: 6.0
score: 14.3
coord: 421..477
e-value: 7.6E-15
score: 65.3
coord: 280..336
e-value: 110.0
score: 2.8
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 343..408
score: 10.053
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 32..87
score: 7.031
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 96..150
score: 6.693
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 412..470
score: 13.258
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 471..532
score: 5.87
IPR013649Integrin alpha-2PFAMPF08441Integrin_alpha2coord: 519..993
e-value: 2.4E-34
score: 119.0
IPR013517FG-GAP repeatPFAMPF01839FG-GAPcoord: 358..399
e-value: 1.2E-8
score: 34.8
coord: 430..461
e-value: 8.6E-9
score: 35.3
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved sitePROSITEPS00242INTEGRIN_ALPHAcoord: 1094..1101
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 705..833
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 858..1075

Blast
[Close]
BLAST of TCONS_00072033-protein vs. Swiss-Prot (Human)
Match: ITA2B (Integrin alpha-IIb OS=Homo sapiens GN=ITGA2B PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.214e-41
Identity = 177/760 (23.29%), Postives = 323/760 (42.50%), Query Frame = 0 
Query:  355 TMYGASLAAIDINGDGFQDLAIGAPLFSDQFGNRIGQDEGRVFIFINNGKAQFDYEVNMTLTGEKQEAARFGSSITNIGDVNGDGTDDLAVGAPWGGKDGNGAVYIYNVRDGKIVDVPSQILHAPVPNG-FFGHSITSSV-IDTRVYPAIAISAPNSNRVFVYKAKTIITLKDNLWVDRVTVPTDINDANCEYKETKYECIYFQANIQDESTNAPETFDVEIQFRTDVRESGEGSRAFIFDNVTQTLTSNLVRNVTFKRGEKKLYRHKLYFSIARATNFEEAVS-LTTSYKAADTKNNCGDGPCAILDQFGTQKGAIEVKYLRQCGTDQICDVNLDIISSEIRVLKGASSVVEPLYIGSFNNEVKLIANVKNWNESAYQAKMTIHFHEDFTLLSLTANTINAKREYDGLAANYTEGNTTFNGTGNLVKFLLDNPILENEVVTVEAQFIVKYLAKPKFFEYPFKLHVNSTGHDANATNNDVTVDLPMKIQTCVQISLDQADVESEKRIKAQVLVYNDTQKPISKPSTAREAGPIVSYNILVQNSGRVPIENMSLDVTLVDKVQNQNLIYISDLSIEGRPCLLNNINVGKLTGDNDIQPQLRRTNETTKDITARRK----RRATHAQLTDTRPPIIDCLNGDCVTMTCENVLNVPVDGIQRLRLTMA-VYLETLQKFESEEMVIQVTPRFGGEYGTVTEQANECPTTIELR---QPFKKSEPILIARRVEWWVILVAIVGALIILDIFCVILYRIGFFKRQR 1103
            + +G S+A  D+NGDG  DL +GAPL+ +   +R   + GRV++F+           ++ LTG  Q   RFGS+I  +GD++ DG +D+AV AP+GG  G G V ++  +   +   PSQ+L +P P G  FG S+  +V ID   YP + + A  +N+V VY+A+ ++     L V     P  +        +T   C   Q  +     N P+   +  + + D ++  +G R  +  +     T NL        G+     H     +    +F + +S +  S   +      G  P  +L   G      + + +  CG D +C   L +          AS    PL +G+ +N ++L  +  N  E AY+A++ +H  +    +   +N    +R    L  N  + N T      +V   L NP+ +N  + +     V  L +       F+L + S  +  N  +  V +D+P++ +        Q ++       + V+   + ++   + ++    GP V +   + N+G   +  + L + L  + Q  +L+YI D+  +G         V  L  D  +                RR+         ++L D  P ++ C +  C  + C+  L     G + +   +A ++L +L +   ++ V+Q    F      V+      P     R   Q + +    L  R +  W +LV ++G L++L I  + ++++GFFKR R
Sbjct:  318 SYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTG-TQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPA-VKSCVLPQTKTPVSCFNIQMCVGATGHNIPQKLSLNAELQLDRQKPRQGRRVLLLGSQQAGTTLNLDLG-----GKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEAGMAPAVVLH--GDTHVQEQTRIVLDCGEDDVCVPQLQLT---------ASVTGSPLLVGA-DNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFER----LICNQKKENET-----RVVLCELGNPMKKNAQIGIAMLVSVGNLEE-AGESVSFQLQIRSK-NSQNPNSKIVLLDVPVRAEA-------QVELRGNSFPASLVVAAEEGER---EQNSLDSWGPKVEHTYELHNNGPGTVNGLHLSIHLPGQSQPSDLLYILDIQPQGGLQCFPQPPVNPLKVDWGLPIPSPSPIHPAHHKRDRRQIFLPEPEQPSRLQD--PVLVSCDSAPCTVVQCD--LQEMARGQRAMVTVLAFLWLPSLYQRPLDQFVLQSHAWF-----NVSSLPYAVPPLSLPRGEAQVWTQLLRALEERAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 1028
The following BLAST results are available for this feature:
BLAST of TCONS_00072033-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITA2B1.214e-4123.29Integrin alpha-IIb OS=Homo sapiens GN=ITGA2B PE=1 ... [more]
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