TCONS_00072070-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072070-protein
Unique Name	TCONS_00072070-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	480

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072070-protein ID=TCONS_00072070-protein|Name=TCONS_00072070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
INKIMTREAGAQSPVDPSVDELKTKRGRKPSQAKLAMLESKRLFADKRRF
PDDNGDGGNKKSKKKKSSTNDKNKKNSTPAASTSTTASDFKNINLKKKKN
GKGKNGESSLKGKSAKNDHENDRRKKRKAPSRYRTESTDDDANSSDDEFW
DAKKSGGRHNDYYDDREDFFFDSDSDDDLDNELLQNSDEDTEDASETDMA
TLEEEISEMKEQMYQQKIKELKGKLEELERRTLPEFKSKFEELKREKEDW
IRTAYAYKSYEEREIDREYEREKKQAKEDFEQKKQELKEHLIAELNEKKR
LIENEKTTLELSGGIGPILPLEVKPTVTRKLRRRGPEPLPVAEKKRKTNS
TPLNLLLNEEQILADLKKIGKHHKPHSSSTSEEKTPKPSKNADKCDPTTF
PDGTDAKIKDEKLFYNKEWYQSGDPVYLNSRDGERFHAQIHSITSTREIW
IKKLTEGTRLKIYVGHLQRGKYAIERREKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044762	XLOC_044762	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072070	TCONS_00072070	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013907	Sds3

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 266..312
None	No IPR available	COILS	Coil	Coil	coord: 192..231
None	No IPR available	GENE3D	1.20.5.320		coord: 193..263 e-value: 1.3E-4 score: 21.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 370..404
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 329..351
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..198
IPR013907	Sds3-like	SMART	SM01401	Sds3_2	coord: 195..368 e-value: 5.7E-32 score: 122.2
IPR013907	Sds3-like	PFAM	PF08598	Sds3	coord: 197..335 e-value: 6.6E-17 score: 62.1

Blast

[Close]

BLAST of TCONS_00072070-protein vs. Swiss-Prot (Human)
Match: SDS3 (Sin3 histone deacetylase corepressor complex component SDS3 OS=Homo sapiens GN=SUDS3 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 6.740e-71
Identity = 130/295 (44.07%), Postives = 191/295 (64.75%), Query Frame = 0

Query:  187 SDEDTEDASETDMATLEEE-ISEMKEQMYQQKIKELKGKLEELERRTLPEFKSKFEELKREKEDWIRTAYAYKSYEEREIDREYEREKKQAKEDFEQKKQELKEHLIAELNEKKRLIENEKTTLELSGGIGPILPLEVKPTVTRKLRRRGPEPLPVAEKKRKTNSTPLNLLLNEEQILADLKKIGKHHKPH--SSSTSEEKTPKPSKNADKCDPTTFP-DGTDAKIKDEKLFYNKEWYQSGDPVYLNSRDGERFHAQIHSITSTREIWIKKLTEGTRLKIYVGHLQRGKYAIERR 477
            SDEDTEDASETD+A  +EE   EMKEQMYQ K+  LK +L++L+  TL E++ + ++L ++ ++ IR A  +   E  +++R Y +EKK A ++FE KK ELKE+LIAEL EKK++IENEK T+EL+G       +EVKP +TRKLRRR  +P+P+ +K+RK     LN LL +EQI+ DL+ + K   P   +S +S E  P          P   P    +A+I+D KL+Y+K WY     +YL S+D ++    I S+ +  EIW++K ++ T+++IY+G LQRG + I RR
Sbjct:   45 SDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGD-----SMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIMEDLRTLNKLKSPKRPASPSSPEHLP--------ATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVISSVGAN-EIWVRKTSDSTKMRIYLGQLQRGLFVIRRR 325

The following BLAST results are available for this feature:

BLAST of TCONS_00072070-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072070-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SDS3	6.740e-71	44.07	Sin3 histone deacetylase corepressor complex compo...	[more]

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TCONS_00072070-protein (polypeptide) - C. hemisphaerica