TCONS_00072142-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072142-protein
Unique Name	TCONS_00072142-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	486

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072142-protein ID=TCONS_00072142-protein|Name=TCONS_00072142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
MKLKLLLDMKEMRKLKGLQNKNENLRQTSLYESFGHLPELVLFFASLGSH
ISGSACHYYKYFYFSERRNFQFDFRNHKQTCAKHLNTTQSKQQTMVQSDM
SSFQIIDIYFGMVPTILACLFLGPISDRVGRKPIIKIGLIGMILTQIMHL
AVIHMDWPIWVFYLVTLMRSISGGELGIRIAAMAYVVDICKETKSLAWKL
ATLQCVELLGAMISSYTSGPLIQNTGFQFPIMLSLALQITPMVYTVCFLK
ESYKMCEKDRLPAKEILKQPLHLITVFTKQRKTRKELYLLFAVFIMLSET
THAFDSGGALFLLGQPFCMPPNLLSYLHGMKITLSVTGLLFSTKLLAKYL
SSLTLCLVSIFVTIIDRSSMVVIETTLMVFLFGGLRFFEGWYSPILRSFI
SSSVNEAEQGSILCLLSIMVTILTSITKTIFLTLYTKLLQHGKVRWFFVL
TSPLIIMATPLLIYFWLVKKKREKSEKEFGNKEIKD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044802	XLOC_044802	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072142	TCONS_00072142	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 40..277 e-value: 8.7E-18 score: 63.8
None	No IPR available	GENE3D	1.20.1250.20		coord: 278..481 e-value: 4.7E-7 score: 28.7
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 112..425 e-value: 1.5E-11 score: 43.7
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 112..466 e-value: 2.60187E-6 score: 46.9233
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 109..477

Blast

[Close]

BLAST of TCONS_00072142-protein vs. Swiss-Prot (Human)
Match: S46A3 (Solute carrier family 46 member 3 OS=Homo sapiens GN=SLC46A3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.804e-16
Identity = 95/421 (22.57%), Postives = 176/421 (41.81%), Query Frame = 0

Query:   39 ELVLFFASLGSHISGSACHYYKYF-YFSERRNFQFDFRNHKQTCAKHLNTTQSKQQTMVQSDMSSFQI-IDIYFGMVPTILACLFLGPISDRVGRKPIIKIGLIGMILTQIMHLAVIHMDWPIWVFYLVTLMRSISGGELGIRIAAMAYVVDICKETKSLAWKLATLQCVELLGAMISSYTSGPLIQNTGFQFP---IMLSLALQITPMVYTVCFLKESYKMCEKDR--LPAKEILKQPLHLITVFTKQRKTRKELYLLFAVFIMLSETTHAFDSGG-----ALFLLGQPFCMPPNLLSYLHGMKITLSVTGLLFSTKLLAKYLSSLTLCLVSIFVTIIDRSSMVVIETTLMVFLFGGLRFFEGWYSPILRSFISSSVNEAEQGSILCLLSIMVTILTSITKTIFLTLYTKLLQHGKVRWF 447
            E  +F ++    ++G     Y Y   + E  N+ F   ++   C K+ ++     Q  VQ  +S F + +DI  G++P +++   L  ISD  GRK  + +  +G + T +    + +  +P  +    T + +  G       A  AY+VD CKE K    ++A +  +  L   ++  +SG  I+  GF++    I +SLA+    ++Y + FL +  K C      +   E  K   +   +  K    ++   L   +F ++   T+ F   G      L+ L  P C     + Y   +     +T  L    L +  +  + +  + IF T+   +      TTLM+FL      F      +LRS +S  V   EQG++   ++ + T+      + F  +Y+       V W+
Sbjct:    7 EPAIFLSAFAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNISECEKNKSSPIFAFQEEVQKKVSRFNLQMDIS-GLIPGLVSTFILLSISDHYGRKFPMILSSVGALATSVWLCLLCYFAFPFQLLIASTFIGAFCGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLIIAVSLAVN---LIYILFFLGDPVKECSSQNVTMSCSEGFKNLFYRTYMLFKNASGKRRFLLCLLLFTVI---TYFFVVIGIAPIFILYELDSPLCWNEVFIGYGSALGSASFLTSFL-GIWLFSYCMEDIHMAFIGIFTTMTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYS-----ATVAWY 414

The following BLAST results are available for this feature:

BLAST of TCONS_00072142-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072142-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S46A3	2.804e-16	22.57	Solute carrier family 46 member 3 OS=Homo sapiens ...	[more]

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TCONS_00072142-protein (polypeptide) - C. hemisphaerica