TCONS_00072357-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072357-protein
Unique Name	TCONS_00072357-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	529

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072357-protein ID=TCONS_00072357-protein|Name=TCONS_00072357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MSIYESIVEARQGGGHQATTTIKPKMADTMMLNFSNRYNNTNGSTSGQTP
SKCNGNGECHRNKFSKYESQDTIPQGSYNDITYEIPSPTRVSRRKKIKEH
TEEFIGNSTLHGFHYCFDKRYRFRRIIWILVVMGSIGMLLQKLFEAGQKY
FDRPFTSTSTVINPEKMKFPAVSLCNINDFRMSKLEGTTFLKIMKGELHY
SILSGPDYANASKQANHRLQNMLMDCTVNFMQQNKSIAKCSPANFSTFYQ
SQGEKCFTINSGNVNSHFADLSEGGRKKSLEMILDLEHYDYFDKNDVGVR
LIIHDQDETPIRFSGVALPPGFTSYVEVGKTETINLKKPYKTACDSRKLD
YFSVYSENACWLEKLTKFVTKKCHCKDGFMPGTERVCSVSELFNCTWPNW
EAFKSIPKEEVDCPVACKVTDFNTLISYAQFPSNRIADRYAEQKFKLKGT
IMEKRKFVRDNLLRIVIYYEKMTYKRITQAPSYDTMILLGDIGGQLGLFL
GTSILTYLEFFDYLAMIIYTKYFEIYKIK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044930	XLOC_044930	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072357	TCONS_00072357	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 526..529
None	No IPR available	GENE3D	1.10.287.770		coord: 109..159 e-value: 2.7E-6 score: 27.2
None	No IPR available	GENE3D	2.60.470.10		coord: 382..467 e-value: 8.0E-6 score: 25.2 coord: 160..381 e-value: 2.4E-37 score: 128.4
None	No IPR available	GENE3D	1.10.287.770		coord: 468..521 e-value: 1.7E-18 score: 65.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..57
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 493..509 score: 50.12 coord: 165..181 score: 45.18 coord: 298..316 score: 34.74 coord: 125..142 score: 20.0 coord: 413..433 score: 32.57 coord: 459..479 score: 24.95 coord: 479..493 score: 29.07
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 104..513 e-value: 2.1E-80 score: 270.8

Blast

[Close]

BLAST of TCONS_00072357-protein vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.683e-58
Identity = 138/464 (29.74%), Postives = 218/464 (46.98%), Query Frame = 0

Query:  104 FIGNSTLHGFHYCFD-KRYRFRRIIWILVVMGSIGMLLQKLFEAGQKYFDRPFTSTSTVINPEKMKFPAVSLCNINDFRMSKLEGTTFLKIMKGELHYSI----------LSGPDYANASKQ--------------------ANHRLQNMLMDCTVNFMQQNKSIAKCSPANFSTFYQSQGEKCFTINSGNVNSHFADLSEGGRKKSLEMILDLEHYDYFD--------KNDVGVRLIIHDQDETP-IRFSGVALPPGFTSYVEVGKTETINLKKPYKTACDSRK--LDYFSVYSENACWLEKLTKFVTKKCHCKDGFMPGTERVCSVSELFNCTWPNWEAFKSIPKEEVDCPVACKVTDFNTLISYAQFPSNRIADRYAEQKFKLKGTIMEKRKFVRDNLLRIVIYYEKMTYKRITQAPSYDTMILLGDIGGQLGLFLGTSILTYLEFFDYLAMIIYTKYFEI 525
            F   STLHG  + F       RR++W +  +GS+G+LL +  E    YF     +    +  + + FPAV+LCN+N FR S+L  TT      GEL   +          L+ P    A +Q                      H L++M++ C   F  Q     +C   +F+T +   G KC+  NSG          +GG    LE++LD++  +Y            + GV++ IH Q E P I+  G  + PGF ++V   +     L  P+   C S +  LD+F VYS  AC ++  T+++ + C+C+   MPG    C+  +   C  P              C   C +T +N  +S  + PS + + +Y E+KF       +  K++ +N+L + I++E + Y+ I Q  +Y+   LLGDIGGQ+GLF+G SILT LE FDY+  +I  K  ++
Sbjct:   20 FANTSTLHGIRHIFVYGPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQHVTKVDEVVAQSLVFPAVTLCNLNGFRFSRL--TTNDLYHAGELLALLDVNLQIPDPHLADPSVLEALRQKANFKHYKPKQFSMLEFLHRVGHDLKDMMLYC--KFKGQ-----ECGHQDFTTVFTKYG-KCYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWG-ECRSSEMGLDFFPVYSITACRIDCETRYIVENCNCRMVHMPGDAPFCTPEQHKECAEPALGLLAEKDSNYCLCRTPCNLTRYNKELSMVKIPS-KTSAKYLEKKFN------KSEKYISENILVLDIFFEALNYETIEQKKAYEVAALLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLDL 465

The following BLAST results are available for this feature:

BLAST of TCONS_00072357-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072357-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC2	2.683e-58	29.74	Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00072357-protein (polypeptide) - C. hemisphaerica