TCONS_00072401-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072401-protein
Unique NameTCONS_00072401-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length927

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072401-protein ID=TCONS_00072401-protein|Name=TCONS_00072401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=927bp
MSNQENQTVLENLGESFKSFLFSLDDKPSTTIRIFDRGDFFTVHDEDATF
AAKEYFKTTSVIKEFGKGNKKTLSVTLSKMNFENFVRELLLVRSYRVELY
RSKGKNVNWELVARASPGNLQQFEDVLFKNNVMSESSIVLSVKLTTSETG
DQTVCCAFTDISERIIQLLEFGDNDQFSNFEVLLMQVGAKECLVTKQDLQ
NNCLKVVLDRSNILVTETHKADYNSSNILQDLNRLLKKSNDNETVASMPE
LELKGAVCCISSLIKYLELLSDETIFGQLVLKKFDLTQYMHLDSAAVRAL
HILPTSLDGGNKSVSLYGLLNQCRTSQGQRLLAQWIKQPLLDIAKMEERL
DIVDAILHDMELLQELQENALKKLPDVSRLAKRFHSRKATLQDCVRVYQG
VRQLPGIVNILKEHDGEHKTMIEEVFMKPLQDITTDFNNYMEMIETTMDM
NLVEQNEFVIKAEFDESLAECKENIDQVTEQFDGVLLKAAKQLNLEAGKT
IKLDNNSQLGYYFRITLKEEKKLRNNNKFYTLETRKDGVRFTNSTLKDLS
EQLMSHKALYNELQSTLAKEVLNIAWGYAEPLRSFASIIAYLDVLLSFAV
VAAQAPTQYVRPTLYEKGAGKIILKGSRHPCLEVQDGIGFIPNDVTLTKD
EQELLIITGPNMGGKSTFIRQVALTTLMAQIGCFVPCTSAEITITDRILA
RVGAADSQLKGVSTFLSEMLETKTILKSATKDSLVIIDELGRGTSTYDGF
GLAWAISEFIATEIHAFALFATHFHELTSLSDDVAVVANYHVSALTTNKQ
LTLLYKVKPGVCDQSFGIHVAEMVNFPKHVIEYAKRKSKELEDFHQDEET
NSEGFVRTEKSEVEAKKRRLDKKEGEKLVHDFLVKLREKDKEGLSDDDLA
NHIQNELLNLKQSGNKYIEQIINKHEQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044951XLOC_044951Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072401TCONS_00072401Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007696DNA_mismatch_repair_MutS_core
IPR000432DNA_mismatch_repair_MutS_C
IPR007861DNA_mismatch_repair_MutS_clamp
IPR011184DNA_mismatch_repair_MutS
IPR007860DNA_mmatch_repair_MutS_con_dom
IPR007695DNA_mismatch_repair_MutS-lik_N
IPR016151DNA_mismatch_repair_MutS_N
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 546..566
NoneNo IPR availableCOILSCoilCoilcoord: 461..481
NoneNo IPR availableCOILSCoilCoilcoord: 856..876
NoneNo IPR availableGENE3D1.10.1420.10coord: 289..444
e-value: 9.9E-40
score: 135.6
NoneNo IPR availableGENE3D1.10.1420.10coord: 445..574
e-value: 2.2E-23
score: 82.3
NoneNo IPR availableGENE3D3.40.50.300coord: 609..881
e-value: 7.9E-47
score: 159.1
NoneNo IPR availableCDDcd03285ABC_MSH2_eukcoord: 623..842
e-value: 5.41558E-140
score: 417.933
IPR007696DNA mismatch repair protein MutS, coreSMARTSM00533DNAendcoord: 311..635
e-value: 9.5E-87
score: 304.2
IPR007696DNA mismatch repair protein MutS, corePFAMPF05192MutS_IIIcoord: 295..599
e-value: 2.8E-37
score: 128.7
IPR007696DNA mismatch repair protein MutS, coreSUPERFAMILY48334DNA repair protein MutS, domain IIIcoord: 293..604
IPR000432DNA mismatch repair protein MutS, C-terminalSMARTSM00534mutATP5coord: 652..839
e-value: 6.0E-117
score: 404.5
IPR000432DNA mismatch repair protein MutS, C-terminalPFAMPF00488MutS_Vcoord: 655..842
e-value: 4.8E-82
score: 274.5
IPR000432DNA mismatch repair protein MutS, C-terminalPROSITEPS00486DNA_MISMATCH_REPAIR_2coord: 733..749
IPR007861DNA mismatch repair protein MutS, clampPFAMPF05190MutS_IVcoord: 463..557
e-value: 4.6E-18
score: 65.2
IPR011184DNA mismatch repair MutSPIRSFPIRSF005813MSH2coord: 1..926
e-value: 0.0
score: 1134.2
IPR007860DNA mismatch repair protein MutS, connector domainGENE3D3.30.420.110coord: 117..287
e-value: 7.8E-31
score: 106.7
IPR007860DNA mismatch repair protein MutS, connector domainPFAMPF05188MutS_IIcoord: 149..273
e-value: 1.2E-12
score: 48.1
IPR007695DNA mismatch repair protein MutS-like, N-terminalPFAMPF01624MutS_Icoord: 18..123
e-value: 6.6E-17
score: 61.7
IPR016151DNA mismatch repair protein MutS, N-terminalGENE3D3.40.1170.10coord: 2..116
e-value: 2.1E-35
score: 120.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 609..843

Blast
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BLAST of TCONS_00072401-protein vs. Swiss-Prot (Human)
Match: MSH2 (DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1)

HSP 1 Score: 973 bits (2514), Expect = 0.000e+0
Identity = 487/935 (52.09%), Postives = 672/935 (71.87%), Query Frame = 0 
Query:    1 MSNQENQTV-LENLGE-SFKSFLFSLDDKPSTTIRIFDRGDFFTVHDEDATFAAKEYFKTTSVIKEFGKGNKKTL-SVTLSKMNFENFVRELLLVRSYRVELYRSKGKNV-----NWELVARASPGNLQQFEDVLFKNNVMSESSIVLSVKLTTSETGDQTVCCAFTDISERIIQLLEFGDNDQFSNFEVLLMQVGAKECLVTKQDLQNNC--LKVVLDRSNILVTETHKADYNSSNILQDLNRLLK-KSNDNETVASMPELELKGAVCCISSLIKYLELLSDETIFGQLVLKKFDLTQYMHLDSAAVRALHILPTSLDGGNKSVSLYGLLNQCRTSQGQRLLAQWIKQPLLDIAKMEERLDIVDAILHDMELLQELQENALKKLPDVSRLAKRFHSRKATLQDCVRVYQGVRQLPGIVNILKEHDGEHKTMIEEVFMKPLQDITTDFNNYMEMIETTMDMNLVEQNEFVIKAEFDESLAECKENIDQVTEQFDGVLLKAAKQLNLEAGKTIKLDNNSQLGYYFRITLKEEKKLRNNNKFYTLETRKDGVRFTNSTLKDLSEQLMSHKALYNELQSTLAKEVLNIAWGYAEPLRSFASIIAYLDVLLSFAVVAAQAPTQYVRPTLYEKGAGKIILKGSRHPCLEVQDGIGFIPNDVTLTKDEQELLIITGPNMGGKSTFIRQVALTTLMAQIGCFVPCTSAEITITDRILARVGAADSQLKGVSTFLSEMLETKTILKSATKDSLVIIDELGRGTSTYDGFGLAWAISEFIATEIHAFALFATHFHELTSLSDDVAVVANYHVSALTTNKQLTLLYKVKPGVCDQSFGIHVAEMVNFPKHVIEYAKRKSKELEDFHQDEETNSEGFVRTEKSEVEAKKRRLDKKEGEKLVHDFLVKLREKDKEGLSDDDLANHIQNELLNLKQSGNKYIEQIINK 924
            M+ Q  +T+ LE+  E  F  F   + +KP+TT+R+FDRGDF+T H EDA  AA+E FKT  VIK  G    K L SV LSKMNFE+FV++LLLVR YRVE+Y+++  N      +W L  +ASPGNL QFED+LF NN MS S  V+ VK++  + G + V   + D  +R + L EF DNDQFSN E LL+Q+G KEC++   +   +   L+ ++ R  IL+TE  KAD+++ +I QDLNRLLK K  +    A +PE+E + AV  +S++IK+LELLSD++ FGQ  L  FD +QYM LD AAVRAL++   S++    S SL  LLN+C+T QGQRL+ QWIKQPL+D  ++EERL++V+A + D EL Q LQE+ L++ PD++RLAK+F  + A LQDC R+YQG+ QLP ++  L++H+G+H+ ++  VF+ PL D+ +DF+ + EMIETT+DM+ VE +EF++K  FD +L+E +E ++ + ++    L+ AA+ L L+ GK IKLD+++Q GYYFR+T KEEK LRNN  F T++ +K+GV+FTNS L  L+E+   +K  Y E Q  + KE++NI+ GY EP+++   ++A LD ++SFA V+  AP  YVRP + EKG G+IILK SRH C+EVQD I FIPNDV   KD+Q   IITGPNMGGKST+IRQ  +  LMAQIGCFVPC SAE++I D ILARVGA DSQLKGVSTF++EMLET +IL+SATKDSL+IIDELGRGTSTYDGFGLAWAISE+IAT+I AF +FATHFHELT+L++ +  V N HV+ALTT + LT+LY+VK GVCDQSFGIHVAE+ NFPKHVIE AK+K+ ELE+F    E  S+G+   +  E  AKK  L++++GEK++ +FL K+++     +S++++   ++     +    N ++ +II++
Sbjct:    1 MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVD-GQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGE--SQGY---DIMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAKNNSFVNEIISR 929
The following BLAST results are available for this feature:
BLAST of TCONS_00072401-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH20.000e+052.09DNA mismatch repair protein Msh2 OS=Homo sapiens G... [more]
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