TCONS_00072577-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072577-protein
Unique NameTCONS_00072577-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072577-protein ID=TCONS_00072577-protein|Name=TCONS_00072577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MDIPPNQTIYINNLNEKMKKEDLKKHLYTLFSQFGPVIDIVAMKTPKMRG
QAFVVFREIPMATNALRSMQGFIFFDKAMRITFARSKSDVFAKNDGTYWT
KGKAEKRKAEEARKRQLAAKQARRETVPVKETNGHTPAPPAPNETNGDKT
DEIPTNNILFLSNLPDETTQMMLSMLFQEMPGFKDVRLVDGRADIGFVEF
DTPSQAQVAKDQLDGFKITPEKAMVIKYAKQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045038XLOC_045038Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072577TCONS_00072577Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..82
e-value: 2.0E-14
score: 63.9
coord: 158..227
e-value: 6.2E-10
score: 49.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 159..218
e-value: 6.5E-13
score: 48.2
coord: 9..79
e-value: 4.2E-12
score: 45.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..231
score: 12.594
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..86
score: 14.709
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 5..96
coord: 154..222
NoneNo IPR availableGENE3D3.30.70.330coord: 144..231
e-value: 4.8E-14
score: 51.7
NoneNo IPR availableGENE3D3.30.70.330coord: 1..128
e-value: 4.5E-20
score: 71.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..152
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 8..85
e-value: 8.79632E-47
score: 150.757

Blast
[Close]
BLAST of TCONS_00072577-protein vs. Swiss-Prot (Human)
Match: RU2B (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.131e-75
Identity = 124/234 (52.99%), Postives = 161/234 (68.80%), Query Frame = 0 
Query:    1 MDIPPNQTIYINNLNEKMKKEDLKKHLYTLFSQFGPVIDIVAMKTPKMRGQAFVVFREIPMATNALRSMQGFIFFDKAMRITFARSKSDVFAKNDGTYWTKGKAEKRKAEEARKRQLAA--KQARRETVPVKETNGH-TPAPPAPNETNGDKTDEIPTNNILFLSNLPDETTQMMLSMLFQEMPGFKDVRLVDGRADIGFVEFDTPSQAQVAKDQLDGFKITPEKAMVIKYAKQ 231
            MDI PN TIYINN+N+K+KKE+LK+ LY LFSQFG V+DIVA+KT KMRGQAFV+F+E+  +TNALR +QGF F+ K MRI +A++ SD+ +K  GT+  K K +++K  +  ++      K+  + T     T G+ TP P  P         + P N ILFL+NLP+ET +MMLSMLF + PGFK+VRLV GR DI FVEF+   QA  A+D L GFKITP  AM I YAK+
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNSTPNPQVP---------DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
The following BLAST results are available for this feature:
BLAST of TCONS_00072577-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RU2B3.131e-7552.99U2 small nuclear ribonucleoprotein B'' OS=Homo sap... [more]
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